Browse Element(s) Details


Os.9714.2.A1_a_at

Description gb:CB660896
DB_XREF= gi:29664621
DB_XREF=OSJNEd03B09.r
CLONE=OSJNEd03B09
TID=Os.9714.2
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.9714 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_188012.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5119011/11growth-regulating factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51160Os.3406.1.S1_at11/114+30072379..30073956transposon protein, putative, unclassified, expressed
LOC_Os04g51166Os.53482.1.S1_at11/114+30075700..30078336expressed protein
LOC_Os04g51172Os.54507.1.S1_at9/114+30078781..30086524expressed protein
LOC_Os04g51180OsAffx.26559.1.S1_at11/114+30092501..30097133G protein-coupled receptor 89 variant, putative, expressed
LOC_Os04g51190Os.9714.2.A1_a_at11/114+30098620..30102567growth-regulating factor, putative, expressed
LOC_Os04g51200NANA4+30118520..30120857retrotransposon protein, putative, unclassified
LOC_Os04g51210OsAffx.20293.2.S1_at1/114+30124437..30125828retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9714.2.A1_a_at--1132--10571Chr04:30099314..30099338 (25 bp)
TTCTCAGACCTCCACATTTTCAGTT
LOC_Os04g51190
Os.9714.2.A1_a_at--738--171Chr04:30099299..30099323 (25 bp)
ATTTTCAGTTTCGAGCTACCCTATG
LOC_Os04g51190
Os.9714.2.A1_a_at--289--4851Chr04:30099285..30099309 (25 bp)
GCTACCCTATGCTTGGAAATCTGAG
LOC_Os04g51190
Os.9714.2.A1_a_at--739--3611Chr04:30099274..30099298 (25 bp)
CTTGGAAATCTGAGTGAGCTGGACC
LOC_Os04g51190
Os.9714.2.A1_a_at--820--5891Chr04:30099259..30099283 (25 bp)
GAGCTGGACCAGAACACCATCTGCT
LOC_Os04g51190
Os.9714.2.A1_a_at--302--2031Chr04:30099189..30099213 (25 bp)
ACTATGTGACCGTCGACTCCGGGAA
LOC_Os04g51190
Os.9714.2.A1_a_at--419--10351Chr04:30099139..30099163 (25 bp)
TTTTTCGACGAGTGGCCAAAGGCAA
LOC_Os04g51190
Os.9714.2.A1_a_at--544--2311Chr04:30099122..30099146 (25 bp)
AAAGGCAAGGGACTCCTGGCCTGAT
LOC_Os04g51190
Os.9714.2.A1_a_at--1014--9271Chr04:30099109..30099133 (25 bp)
TCCTGGCCTGATCTAGCTGATGACA
LOC_Os04g51190
Os.9714.2.A1_a_at--283--10011Chr04:30099096..30099120 (25 bp)
TAGCTGATGACAACAGCCTTGCCAC
LOC_Os04g51190
Os.9714.2.A1_a_at--918--4551Chr04:30098817..30098841 (25 bp)
GCGCCTAGTTTTCCCAAAGCAAGAA
LOC_Os04g51190
Target Sequence 
TTCTCAGACCTCCACATTTTCAGTTTCGAGCTACCCTATGCTTGGAAATCTGAGTGAGCTGGACCAGAACACCATCTGCT
CGCTGCCGAAGGTGGAGAGGGAGCCATTGTCATTCTTCGGGAGGGACTATGTGACCGTCGACTCCGGGAAGCAGGAGAAC
CAGACGCTGCGCCCCTTTTTCGACGAGTGGCCAAAGGCAAGGGACTCCTGGCCTGATCTAGCTGATGACAACAGCCTTGC
CACCTTCTCTGCCACTCAGCTCTGGATCTCCATTCCAATGGCAACCTCTGACTTCTGGACCACCAGCTCACGATCACACA
ACGATGAGTGAATATCATCTGGATCCCTACGTGTCAATGAAGCGCTGACCACCGTTTGCTGAATTGTACGGAGTCCTGGA
CTGCGCCTAGTTTTCCCAAAGCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9714.2.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis