Browse Element(s) Details


Os.9815.1.S1_at

Description gb:AK108395.1
DB_XREF= gi:32993604
TID=Os.9815.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9815 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-F09, full insert sequence.
FL= gb:AK108395.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g153702/11ribosomal protein L13 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15290NANA5+8649347..8651906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15300Os.55077.1.S1_at11/115+8655868..8658571expressed protein
LOC_Os05g15310OsAffx.26905.1.S1_at11/115+8658997..8659323hypothetical protein
LOC_Os05g15320NANA5+8659936..8663086transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15330OsAffx.26906.1.S1_at10/115+8663358..8664316hypothetical protein
LOC_Os05g15340NANA5+8666397..8667505retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g15350OsAffx.14706.1.S1_at11/115+8668015..8669655hypothetical protein
LOC_Os05g15350OsAffx.14659.1.S1_at2/115+8668015..8669655hypothetical protein
LOC_Os05g15360Os.27007.1.A1_at11/115+8671073..8675764expressed protein
LOC_Os05g15360Os.20186.1.S1_at11/115+8671073..8675764expressed protein
LOC_Os05g15360Os.49286.1.S1_x_at10/115+8671073..8675764expressed protein
LOC_Os05g15360Os.24955.1.A1_x_at1/115+8671073..8675764expressed protein
LOC_Os05g15370Os.27007.1.A1_at3/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.49286.1.S1_x_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.9815.1.S1_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.24955.1.A1_x_at1/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15380OsAffx.31445.1.S1_at11/115+8684556..8685685lipase class 3 family protein, putative
LOC_Os05g15380OsAffx.31445.1.S1_x_at11/115+8684556..8685685lipase class 3 family protein, putative
LOC_Os05g15390OsAffx.26907.1.S1_at11/115+8686719..8687499hypothetical protein
LOC_Os05g15400NANA5+8689001..8692779hypothetical protein
LOC_Os05g15410OsAffx.4345.1.S1_at11/115+8696438..8696903hypothetical protein
LOC_Os05g15420Os.27691.1.S1_x_at1/115+8700243..8701208retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15430Os.27691.1.S1_x_at1/115+8701784..8706022retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15440OsAffx.4346.1.S1_at11/115+8708121..8710221hypothetical protein
LOC_Os05g15440Os.56292.1.S1_x_at1/115+8708121..8710221hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9815.1.S1_at--94--9211Chr05:8677120..8677144 (25 bp)
TGCCACGACGCCAAGTGCGCGAGAT
LOC_Os05g15370
Os.9815.1.S1_at--92--6591Chr05:8676943..8676967 (25 bp)
GATTGCTACAAATCTACCTGTTGAT
LOC_Os05g15370
Os.9815.1.S1_at--1120--3052Chr01:39327017..39327042 (25 bp)
AATCTGAATGTCTTTTTGTGTCTTA
NONE
Os.9815.1.S1_at--217--5292Chr01:39327022..39327047 (25 bp)
GAATGTCTTTTTGTGTCTTACAGTA
NONE
Os.9815.1.S1_at--615--931NONE
AGGAATAAAAACCTCAACTGCTTTG
NONE
Os.9815.1.S1_at--606--9711NONE
TCAACTGCTTTGATTTCCTTCGCTG
NONE
Os.9815.1.S1_at--107--8831NONE
TGATTTCCTTCGCTGTTGTTCAGTA
NONE
Os.9815.1.S1_at--176--9251NONE
TCCTTCGCTGTTGTTCAGTACAAGA
NONE
Os.9815.1.S1_at--1026--2211Chr05:8676148..8676172 (25 bp)
ACAAGAGTCCATAATATGCTCCATG
NONE
Os.9815.1.S1_at--398--611Chr05:8676133..8676157 (25 bp)
ATGCTCCATGGAAACGCTGAAAATT
NONE
Os.9815.1.S1_at--226--6531Chr05:8676094..8676118 (25 bp)
GATTCAACTTATCTCGAAAATGAAG
NONE
Target Sequence 
TGCCACGACGCCAAGTGCGCGAGATGCGTCCCCGGGCAAGACGCGCACTGTTAAGGGCGCAGAAGAAAGAGCAGGACAGA
GCAGCAGCGGCATCAACCAAAGATGAAGAAAATGCTAAGAATGCCAAATCNNAGATCACTGCATAGANGCGCATTCAGAT
TGTGTTGTGTGGGTGGAGATTGCTACAAATCTACCTGTTGATGTTTTTTTAAAGGATCCATGTATCTTTTATTTCTTTGA
CATGTAGCCTGCTGGATTCAGTAGACGGTAGAATCATATAACCTGGAAATGAGCAGCTCAATCTGAATGTCTTTTTGTGT
CTTACAGTATGTAACTCAAACCTGGTGTCGCTAGGAATAAAAACCTCAACTGCTTTGATTTCCTTCGCTGTTGTTCAGTA
CAAGAGTCCATAATATGCTCCATGGAAACGCTGAAAATTCCATCTAAGATTTGGATTCAACTTATCTCGAAAATGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis