Browse Element(s) Details


OsAffx.26907.1.S1_at

Description tigr:9633.m01359
TID=OsAffx.26907.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1539011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15320NANA5+8659936..8663086transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15330OsAffx.26906.1.S1_at10/115+8663358..8664316hypothetical protein
LOC_Os05g15340NANA5+8666397..8667505retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g15350OsAffx.14706.1.S1_at11/115+8668015..8669655hypothetical protein
LOC_Os05g15350OsAffx.14659.1.S1_at2/115+8668015..8669655hypothetical protein
LOC_Os05g15360Os.27007.1.A1_at11/115+8671073..8675764expressed protein
LOC_Os05g15360Os.20186.1.S1_at11/115+8671073..8675764expressed protein
LOC_Os05g15360Os.49286.1.S1_x_at10/115+8671073..8675764expressed protein
LOC_Os05g15360Os.24955.1.A1_x_at1/115+8671073..8675764expressed protein
LOC_Os05g15370Os.27007.1.A1_at3/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.49286.1.S1_x_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.9815.1.S1_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.24955.1.A1_x_at1/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15380OsAffx.31445.1.S1_at11/115+8684556..8685685lipase class 3 family protein, putative
LOC_Os05g15380OsAffx.31445.1.S1_x_at11/115+8684556..8685685lipase class 3 family protein, putative
LOC_Os05g15390OsAffx.26907.1.S1_at11/115+8686719..8687499hypothetical protein
LOC_Os05g15400NANA5+8689001..8692779hypothetical protein
LOC_Os05g15410OsAffx.4345.1.S1_at11/115+8696438..8696903hypothetical protein
LOC_Os05g15420Os.27691.1.S1_x_at1/115+8700243..8701208retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15430Os.27691.1.S1_x_at1/115+8701784..8706022retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15440OsAffx.4346.1.S1_at11/115+8708121..8710221hypothetical protein
LOC_Os05g15440Os.56292.1.S1_x_at1/115+8708121..8710221hypothetical protein
LOC_Os05g15450NANA5+8711324..8712109retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26907.1.S1_at--405--9751Chr05:8686929..8686953 (25 bp)
TAAGGATCCCACTGAGTTCGTAAAT
LOC_Os05g15390
OsAffx.26907.1.S1_at--7--9991Chr05:8686992..8687016 (25 bp)
TAGCCTTAGCCACCGGAATAGTACT
LOC_Os05g15390
OsAffx.26907.1.S1_at--479--3551Chr05:8687030..8687054 (25 bp)
CATCGGCTGTAAAGACCTGGTCTGA
LOC_Os05g15390
OsAffx.26907.1.S1_at--772--8171Chr05:8687097..8687121 (25 bp)
GGAACTAGGAATTGCCCAGTGCTTA
LOC_Os05g15390
OsAffx.26907.1.S1_at--635--10451Chr05:8687119..8687143 (25 bp)
TTAGCCCTGACACTAGCCGATTTAG
LOC_Os05g15390
OsAffx.26907.1.S1_at--783--6531Chr05:8687137..8687161 (25 bp)
GATTTAGCCAAGGACGAGCCAATGC
LOC_Os05g15390
OsAffx.26907.1.S1_at--116--3011Chr05:8687157..8687181 (25 bp)
AATGCTATCGGCTGCTAGTTACTTC
LOC_Os05g15390
OsAffx.26907.1.S1_at--213--2451Chr05:8687188..8687212 (25 bp)
AACACCCTGAATGCCTTCCTATTTA
LOC_Os05g15390
OsAffx.26907.1.S1_at--107--151Chr05:8687245..8687269 (25 bp)
ATTATCATGATAACTGGCCTGGACA
LOC_Os05g15390
OsAffx.26907.1.S1_at--764--5411Chr05:8687307..8687331 (25 bp)
GAACCAGTTCACTTTCAAAACCAGA
LOC_Os05g15390
OsAffx.26907.1.S1_at--642--9831Chr05:8687363..8687387 (25 bp)
TAAACATGGGATCTGGCCCTGTCAC
LOC_Os05g15390
Target Sequence 
TAAGGATCCCACTGAGTTCGTAAATGCCGAAACAAACATGATTCCTTTTAGGCTAACCAACCCTAGCCTTAGCCACCGGA
ATAGTACTTTCAAATCCTGGCCATCGGCTGTAAAGACCTGGTCTGAATGGTACAAAAGGGTATCGGCTAGTAAGCAAACA
CATTGGGAGGAACTAGGAATTGCCCAGTGCTTAGCCCTGACACTAGCCGATTTAGCCAAGGACGAGCCAATGCTATCGGC
TGCTAGTTACTTCTGGTCCAACACCCTGAATGCCTTCCTATTTAACCAAGGACCAATGACTCCAACTCTTTTGGACATTA
TCATGATAACTGGCCTGGACATCAACTCATCGGCTAACCCCATCAATTTGAACAGTAAGAACCAGTTCACTTTCAAAACC
AGAAGTATTGGAGGATGGAATGGATTTATTTCCTTAAACATGGGATCTGGCCCTGTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis