Browse Element(s) Details


Os.9822.1.S1_a_at

Description gb:AA753290
DB_XREF= gi:2799033
DB_XREF=96BS0321
CLONE=96BS0321
TID=Os.9822.1
CNT=105
FEA=FLmRNA
TIER=Stack
STK=10
UG=Os.9822 (NCBI UniGene Cluster)
UG_TITLE=MRNA for glutelin, complete cds, clone:lambda RG55
FL= gb:AB016501.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2564011/11Cupin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25610NANA2+14963613..14964396hypothetical protein
LOC_Os02g25620Os.50153.1.S1_at11/112+14967978..14968728expressed protein
LOC_Os02g25630OsAffx.2747.1.S1_at11/112+14978129..14980099hypothetical protein
LOC_Os02g25640Os.9822.1.S1_a_at11/112+14985794..14987804Cupin family protein, expressed
LOC_Os02g25640Os.9822.3.S1_x_at11/112+14985794..14987804Cupin family protein, expressed
LOC_Os02g25650NANA2+14994734..14998249hypothetical protein
LOC_Os02g25660NANA2+15006738..15009845retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0042735cellular_componentprotein body
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9822.1.S1_a_at--422--6411Chr02:14986182..14986206 (25 bp)
GATCTTGTTGATCCCACAGAACTTT
LOC_Os02g25640
Os.9822.1.S1_a_at--661--4091Chr02:14986139..14986163 (25 bp)
CGACGTGAAGGATTTGCATGGGTAT
LOC_Os02g25640
Os.9822.1.S1_a_at--837--1891Chr02:14986137..14986161 (25 bp)
ACGTGAAGGATTTGCATGGGTATCC
LOC_Os02g25640
Os.9822.1.S1_a_at--94--6531Chr02:14986129..14986153 (25 bp)
GATTTGCATGGGTATCCTTCAAGAC
LOC_Os02g25640
Os.9822.1.S1_a_at--1--211Chr02:14986128..14986152 (25 bp)
ATTTGCATGGGTATCCTTCAAGACC
LOC_Os02g25640
Os.9822.1.S1_a_at--80--1171Chr02:14986085..14986109 (25 bp)
AGTCAGATCGCAGGGAAGGCCTCCA
LOC_Os02g25640
Os.9822.1.S1_a_at--592--9651Chr02:14986083..14986107 (25 bp)
TCAGATCGCAGGGAAGGCCTCCATT
LOC_Os02g25640
Os.9822.1.S1_a_at--953--3431Chr02:14986082..14986106 (25 bp)
CAGATCGCAGGGAAGGCCTCCATTC
LOC_Os02g25640
Os.9822.1.S1_a_at--1022--1271Chr02:14986081..14986105 (25 bp)
AGATCGCAGGGAAGGCCTCCATTCT
LOC_Os02g25640
Os.9822.1.S1_a_at--23--6391Chr02:14986080..14986104 (25 bp)
GATCGCAGGGAAGGCCTCCATTCTT
LOC_Os02g25640
Os.9822.1.S1_a_at--324--9351Chr02:14986078..14986102 (25 bp)
TCGCAGGGAAGGCCTCCATTCTTCG
LOC_Os02g25640
Target Sequence 
GATCTTGTTGATCCCACAGAACTTTGCAGTGGTGGTGAAGGCTCGACGTGAAGGATTTGCATGGGTATCCTTCAAGACCN
AATCACAATGCTGTCGATAGTCAGATCGCAGGGAAGGCCTCCATTCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9822.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis