Browse Element(s) Details


Os.9822.3.S1_x_at

Description gb:AK064478.1
DB_XREF= gi:32974496
TID=Os.9822.3
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9822 (NCBI UniGene Cluster)
UG_TITLE=MRNA for glutelin, complete cds, clone:lambda RG55
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-A06, full insert sequence.
FL= gb:AK064478.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2564011/11Cupin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25610NANA2+14963613..14964396hypothetical protein
LOC_Os02g25620Os.50153.1.S1_at11/112+14967978..14968728expressed protein
LOC_Os02g25630OsAffx.2747.1.S1_at11/112+14978129..14980099hypothetical protein
LOC_Os02g25640Os.9822.1.S1_a_at11/112+14985794..14987804Cupin family protein, expressed
LOC_Os02g25640Os.9822.3.S1_x_at11/112+14985794..14987804Cupin family protein, expressed
LOC_Os02g25650NANA2+14994734..14998249hypothetical protein
LOC_Os02g25660NANA2+15006738..15009845retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0042735cellular_componentprotein body
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9822.3.S1_x_at--936--1131Chr02:14986438..14986462 (25 bp)
AGTGCCACCAGAATCGTTCTCCAAA
LOC_Os02g25640
Os.9822.3.S1_x_at--1156--4391Chr02:14986436..14986459 (24 bp)
GCCACCAGAATCGTTCTCCAAAATA
LOC_Os02g25640
Os.9822.3.S1_x_at--418--511Chr02:14986328..14986450 (25 bp)
ATCGTTCTCCAAAATAATGCCTTGC
LOC_Os02g25640
Os.9822.3.S1_x_at--1137--2251Chr02:14986317..14986337 (21 bp)
AAATAATGCCTTGCTTACTCCTCAT
LOC_Os02g25640
Os.9822.3.S1_x_at--199--3091Chr02:14986316..14986337 (22 bp)
AATAATGCCTTGCTTACTCCTCATT
LOC_Os02g25640
Os.9822.3.S1_x_at--1056--5911Chr02:14986199..14986223 (25 bp)
GAGCTTCACCAACAGCAGATCTTGT
LOC_Os02g25640
Os.9822.3.S1_x_at--421--6411Chr02:14986182..14986206 (25 bp)
GATCTTGTTGATCCCACAGAACTTT
LOC_Os02g25640
Os.9822.3.S1_x_at--660--4091Chr02:14986139..14986163 (25 bp)
CGACGTGAAGGATTTGCATGGGTAT
LOC_Os02g25640
Os.9822.3.S1_x_at--93--6531Chr02:14986129..14986153 (25 bp)
GATTTGCATGGGTATCCTTCAAGAC
LOC_Os02g25640
Os.9822.3.S1_x_at--79--1171Chr02:14986085..14986109 (25 bp)
AGTCAGATCGCAGGGAAGGCCTCCA
LOC_Os02g25640
Os.9822.3.S1_x_at--22--6391Chr02:14986080..14986104 (25 bp)
GATCGCAGGGAAGGCCTCCATTCTT
LOC_Os02g25640
Target Sequence 
AGTGCCACCAGAATCGTTCTCCAAAATAATGCCTTGCTTACTCCTCATTGGACGGTAAACGNNCACANNNNNNNGTNANT
GTACGNTGANCCGCNTGGCCNAAGGGCANCATCCAGGTGGTGGATCACCGTGGTAGGAGTGTCTTTGATGGTGAGCTTCA
CCAACAGCAGATCTTGTTGATCCCACAGAACTTTGCAGTGGTNGTGAAGGCTCGACGTGAAGGATTTGCATGGGTATCCT
TCAAGACCNAATCACAATGCTGTCGANAGTCAGATCGCAGGGAAGGCCTCCATTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9822.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis