Browse Element(s) Details


Os.9834.1.S1_a_at

Description gb:AK065129.1
DB_XREF= gi:32975147
TID=Os.9834.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9834 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001P12, full insert sequence.
FL= gb:AK065129.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1007011/11expressed protein
LOC_Os11g100609/11SEU3A protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10060Os.9834.1.S1_a_at9/1111+5394814..5403685SEU3A protein, putative, expressed
LOC_Os11g10070Os.9834.1.S1_a_at11/1111+5414900..5423181expressed protein
LOC_Os11g10080OsAffx.18776.1.S1_at11/1111+5432352..5432888hypothetical protein
LOC_Os11g10090Os.52659.1.S1_at11/1111+5437370..5444022transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003712molecular_functiontranscription cofactor activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9834.1.S1_a_at--905--8112Chr11:5422585..5422609 (25 bp)
GGACTTAGAGCAGCAAACAGCTTCA
LOC_Os11g10070
Os.9834.1.S1_a_at--17--2492Chr11:5422600..5422624 (25 bp)
AACAGCTTCAATAACCTTCAGTATG
LOC_Os11g10070
Os.9834.1.S1_a_at--721--6912Chr11:5422620..5422644 (25 bp)
GTATGACTGGAAACCATCTCAATAA
LOC_Os11g10070
Os.9834.1.S1_a_at--944--2211Chr11:5422711..5422735 (25 bp)
ACAAGTAACAGTGCCGACACCTCGA
LOC_Os11g10070
Os.9834.1.S1_a_at--782--3292Chr11:5422728..5422752 (25 bp)
CACCTCGAACTGTGTCAAAGCATTT
LOC_Os11g10070
Os.9834.1.S1_a_at--1081--8591Chr11:5422752..5422776 (25 bp)
TGGTCTTTGCAATAATGCTGTCATG
LOC_Os11g10070
Os.9834.1.S1_a_at--47--10832Chr11:5422858..5422882 (25 bp)
TTGTGCAACTATGGCATTTTGCTGC
LOC_Os11g10070
Os.9834.1.S1_a_at--341--7112Chr11:5423012..5423036 (25 bp)
GTCAGATGACATCCGATATGTAATT
LOC_Os11g10070
Os.9834.1.S1_a_at--183--10792Chr11:5423111..5423135 (25 bp)
TTGTAGCCTTACTTGACTTTGTATA
LOC_Os11g10070
Os.9834.1.S1_a_at--373--2072Chr11:5423121..5423145 (25 bp)
ACTTGACTTTGTATAAGCTGCCATA
LOC_Os11g10070
Os.9834.1.S1_a_at--367--6792Chr11:5423131..5423155 (25 bp)
GTATAAGCTGCCATAATTTAGTAGT
LOC_Os11g10070
Target Sequence 
GGACTTAGAGCAGCAAACAGCTTCAATAACCTTCAGTATGACTGGAAACCATCTCAATAAAGATAGAACATTACAAGTTT
GATATGACGACGTGGCTGCTCTCACTGGGTTCATTGCTTATGGAGCACAAGTAACAGTGCCGACACCTCGAACTGTGTCA
AAGCATTTGGTCTTTGCAATAATGCTGTCATGGAAAAAGGAATCATTCGCGACAGCAAAGCATCTGAGCCCTGTCAACTG
TATGTTGTAACTGTTCGTTTAGCTGCTTGTGTATTGTGCAACTATGGCATTTTGCTGCCTGCTTCAGTTGTCTTACTGAA
AGATAGAGTTAAAAGGATTAGAGCCTTGCCTTGCATCTGCCACCATCCTTGATGGTACGGTGTTACTCCTTACCCGGAAA
AGAAGTTTTCCCTCCCTTTTTTTCCATGTCAGATGACATCCGATATGTAATTTATCATCCCCTCCGCCTTCCACCCTTAG
CAAGCATATGTGCTGATATCTTTCTTTGCCTAAGGATTCTCTCTCTTTGTAGCCTTACTTGACTTTGTATAAGCTGCCAT
AATTTAGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9834.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis