Browse Element(s) Details


Os.9888.1.S1_at

Description gb:AK069282.1
DB_XREF= gi:32979306
TID=Os.9888.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9888 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023011A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011A18, full insert sequence.
FL= gb:AK069282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3043011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30380NANA5+17529028..17532279transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g30390OsAffx.27083.1.S1_at11/115+17533724..17540517Glycosyl hydrolase family 1 protein
LOC_Os05g30400Os.10482.1.S1_at11/115+17540516..17542514expressed protein
LOC_Os05g30410Os.5533.1.S1_at9/115+17545795..17548104PHD finger-like domain protein 5A, putative, expressed
LOC_Os05g30420Os.55569.1.S1_at10/115+17550003..17552334expressed protein
LOC_Os05g30430Os.9888.1.S1_at11/115+17556799..17560313expressed protein
LOC_Os05g30440OsAffx.27084.1.S1_at11/115+17560522..17561175hypothetical protein
LOC_Os05g30454Os.55625.1.S1_at11/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30454OsAffx.24949.2.S1_at4/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30454OsAffx.9087.1.S1_at2/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30470OsAffx.27085.1.S1_at9/115+17574963..17575793hypothetical protein
LOC_Os05g30480Os.54759.1.S1_at1/115+17578611..17580620Luminal binding protein 4 precursor, putative, expressed
LOC_Os05g30490NANA5+17583469..17584251Harpin-induced protein 1 containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9888.1.S1_at--14--131Chr05:17557353..17557377 (25 bp)
ATTAAGCAGATGACAGCCCTCGTGT
LOC_Os05g30430
Os.9888.1.S1_at--498--6591Chr05:17557264..17557288 (25 bp)
GATTGCGGCATTGCTGTGTCGAGAA
LOC_Os05g30430
Os.9888.1.S1_at--1155--10091Chr05:17557207..17557231 (25 bp)
TATGGATACCCGTCAGTTTGTCCGC
LOC_Os05g30430
Os.9888.1.S1_at--1004--8831Chr05:17557157..17557181 (25 bp)
TGATCTCTCAAGTTGTCGACTCCAT
LOC_Os05g30430
Os.9888.1.S1_at--691--1991Chr05:17557139..17557163 (25 bp)
ACTCCATGGAGCAGCGGTTGGCCAA
LOC_Os05g30430
Os.9888.1.S1_at--680--7691Chr05:17557013..17557037 (25 bp)
GGGTAGTTTCTTTTGATCTCATCTC
LOC_Os05g30430
Os.9888.1.S1_at--1042--6411Chr05:17556999..17557023 (25 bp)
GATCTCATCTCTAGTAGTACTCTGA
LOC_Os05g30430
Os.9888.1.S1_at--533--10071Chr05:17556947..17556971 (25 bp)
TAGGGTGTAGCTCAGCTCACTGACT
LOC_Os05g30430
Os.9888.1.S1_at--287--5911Chr05:17556904..17556928 (25 bp)
GAGCTCTGGCAGTCTGGTACTCTGG
LOC_Os05g30430
Os.9888.1.S1_at--355--7111Chr05:17556875..17556899 (25 bp)
GTCACCTTGACTTATCCTATCTATG
LOC_Os05g30430
Os.9888.1.S1_at--262--2291Chr05:17556802..17556826 (25 bp)
AAATGCTCAGAGCTGCTGTTCTTCT
LOC_Os05g30430
Target Sequence 
ATTAAGCAGATGACAGCCCTCGTGTCTCTCCTCGGCCCTGTGTCTCACAGCCATAGCTTGAGTCTAGCCAGGAGCAGCCT
GACGGTTGGGATTGCGGCATTGCTGTGTCGAGAAAGGGGCATTGAGGGCCTGCGCGAGCCGTCGGGTATGGATACCCGTC
AGTTTGTCCGCTCGCAGGGGCCTGAGTTCCACTCCCTGATCTCTCAAGTTGTCGACTCCATGGAGCAGCGGTTGGCCAAG
ATGGTTGAAGGCAGTGGATGGAGAGATTCTGGAGCTACCAAAGAGCCAGGAAAACCAGCAGACAGTAACAAAGGAACAAT
GCCTGAACCGCATTAAGTTAGGGTAGTTTCTTTTGATCTCATCTCTAGTAGTACTCTGAGATGAGATGGGCTGATAGTAT
CTGTTGTAGGGTGTAGCTCAGCTCACTGACTGCCAGTATAGTATGTACAGAGCTCTGGCAGTCTGGTACTCTGGTTCCGT
CACCTTGACTTATCCTATCTATGAAGTAATGCAACCTCTAACTTGTTTACATATTACATCTCGATTCTATGAAATGCTCA
GAGCTGCTGTTCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis