Browse Element(s) Details


Os.9943.1.S1_s_at

Description gb:AK100606.1
DB_XREF= gi:32985815
TID=Os.9943.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0034C09.3 (P0034C09.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107H09, full insert sequence.
FL= gb:AK100606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4952911/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49470Os.27942.1.A1_at10/111+28774735..28785594CHY zinc finger family protein, expressed
LOC_Os01g49470OsAffx.27359.1.S1_x_at1/111+28774735..28785594CHY zinc finger family protein, expressed
LOC_Os01g49480OsAffx.23727.1.S1_x_at11/111+28790950..28791281hypothetical protein
LOC_Os01g49480OsAffx.23727.1.S1_at11/111+28790950..28791281hypothetical protein
LOC_Os01g49480OsAffx.9277.1.S1_x_at3/111+28790950..28791281hypothetical protein
LOC_Os01g49490Os.46002.1.S1_at11/111+28794537..28798019expressed protein
LOC_Os01g49490OsAffx.11531.1.S1_at10/111+28794537..28798019expressed protein
LOC_Os01g49500Os.37083.2.S1_at1/111+28803760..28804086retrotransposon protein, putative, unclassified
LOC_Os01g49510Os.15758.1.S1_a_at11/111+28806125..28809660expressed protein
LOC_Os01g49529Os.41662.1.S1_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.1.S1_s_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.5.S1_x_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.41662.1.S1_x_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.4.S1_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.5.S1_s_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.2.S1_x_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.11986.3.S1_x_at1/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49550OsAffx.11532.1.S1_at10/111+28825470..28827934hypothetical protein
LOC_Os01g49560OsAffx.21488.1.S1_at11/111+28829211..28830102hypothetical protein
LOC_Os01g49570NANA1+28836103..28836420hypothetical protein
LOC_Os01g49580Os.11986.3.S1_x_at6/111+28839944..28841121expressed protein
LOC_Os01g49580Os.11986.3.S1_at4/111+28839944..28841121expressed protein
LOC_Os01g49580Os.27097.1.A1_at2/111+28839944..28841121expressed protein
LOC_Os01g49580Os.27097.1.A1_x_at1/111+28839944..28841121expressed protein
LOC_Os01g49590OsAffx.11534.2.S1_at11/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590Os.11986.2.S1_x_at11/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590OsAffx.11534.1.S1_x_at7/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590Os.11986.1.S1_at2/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed
LOC_Os01g49590OsAffx.24523.1.S1_at1/111+28841532..28847026receptor serine/threonine kinase PR5K, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9943.1.S1_s_at--437--6091Chr01:28810273..28810297 (25 bp)
GAGTCCGACCCGGCGACGAAGAAGA
LOC_Os01g49529
Os.9943.1.S1_s_at--403--1411Chr01:28810115..28810139 (25 bp)
AGACAAGAAGGGACCTGACCCGCCA
LOC_Os01g49529
Os.9943.1.S1_s_at--1157--151Chr01:28810091..28810115 (25 bp)
ATTATCTCCCGACACGGTGCATGCT
LOC_Os01g49529
Os.9943.1.S1_s_at--865--9291Chr01:28810085..28810109 (25 bp)
TCCCGACACGGTGCATGCTCAGTGG
LOC_Os01g49529
Os.9943.1.S1_s_at--767--5631Chr01:28810081..28810105 (25 bp)
GACACGGTGCATGCTCAGTGGGATA
LOC_Os01g49529
Os.9943.1.S1_s_at--2--8931Chr01:28810027..28810051 (25 bp)
TGACCAGCGGGTTATTAGATTAGAC
LOC_Os01g49529
Os.9943.1.S1_s_at--1044--1711Chr01:28810025..28810049 (25 bp)
ACCAGCGGGTTATTAGATTAGACCA
LOC_Os01g49529
Os.9943.1.S1_s_at--35--9091Chr01:28809965..28809989 (25 bp)
TGCTATTACGCTGAGGCGTGTGCTT
LOC_Os01g49529
Os.9943.1.S1_s_at--665--1831Chr01:28809958..28809982 (25 bp)
ACGCTGAGGCGTGTGCTTGTTGTAT
LOC_Os01g49529
Os.9943.1.S1_s_at--114--3631Chr01:28809943..28809967 (25 bp)
CTTGTTGTATGAGAGGTGCGAGACC
LOC_Os01g49529
Os.9943.1.S1_s_at--950--8751Chr01:28809938..28809962 (25 bp)
TGTATGAGAGGTGCGAGACCTTTTT
LOC_Os01g49529
Target Sequence 
GAGTCCGACCCGGCGACGAAGAAGATGATGACCATGGTCGCCGAGCTGGCTTTCCGGTGCCTGCAGCAGAACGGCGAGAT
GAGGCCGCCGATCAAGGAGGTGCTCGAGGGGCTCAAGGGGGTACAGGACCTATGCGTGATGGAGAAAGATGGAGGCAAAG
ACAAGAAGGGACCTGACCCGCCATTATCTCCCGACACGGTGCATGCTCAGTGGGATAGCAGGCAGACGACTCCTAACACT
AGCCAGTGACCAGCGGGTTATTAGATTAGACCAGTATATTTGCCACCGAGGCTTAATATGTGTGTTACTGCTATTACGCT
GAGGCGTGTGCTTGTTGTATGAGAGGTGCGAGACCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9943.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis