Browse Element(s) Details


OsAffx.10110.2.S1_at

Description tigr:9635.m02723
TID=OsAffx.10110.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2807010/11hypothetical protein
LOC_Os01g592302/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28040OsAffx.28637.1.S1_x_at11/117+16345121..16347785O-methyltransferase family protein, expressed
LOC_Os07g28050Os.54691.1.S1_x_at1/117+16351562..16361300O-methyltransferase family protein
LOC_Os07g28050OsAffx.10222.1.S1_x_at1/117+16351562..16361300O-methyltransferase family protein
LOC_Os07g28050OsAffx.6962.1.S1_at1/117+16351562..16361300O-methyltransferase family protein
LOC_Os07g28060NANA7+16366768..16367146ethylene receptor, putative
LOC_Os07g28070OsAffx.10110.2.S1_at10/117+16370273..16371024hypothetical protein
LOC_Os07g28080OsAffx.10110.3.S1_s_at11/117+16371189..16372233hypothetical protein
LOC_Os07g28090Os.8265.1.S1_at11/117+16373365..16385752ABC transporter family protein, expressed
LOC_Os07g28100NANA7+16392737..16393174hypothetical protein
LOC_Os07g28110OsAffx.22339.1.S1_at11/117+16394491..16396005Cytochrome P450 51, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10110.2.S1_at--637--4251NONE
CCGGGTGTGGACTGTAGATAGACTC
NONE
OsAffx.10110.2.S1_at--510--5731Chr07:16370661..16370685 (25 bp)
GACTGTAGATAGACTCCAAGCGAGA
LOC_Os07g28070
OsAffx.10110.2.S1_at--31--5732Chr07:16370672..16370696 (25 bp)
GACTCCAAGCGAGACAGTGGCCAAA
LOC_Os07g28070
OsAffx.10110.2.S1_at--299--5992Chr07:16370682..16370706 (25 bp)
GAGACAGTGGCCAAACCAACTCCTA
LOC_Os07g28070
OsAffx.10110.2.S1_at--73--2351Chr07:16370694..16370718 (25 bp)
AAACCAACTCCTATGCCTTTTATGC
LOC_Os07g28070
OsAffx.10110.2.S1_at--642--9251Chr07:16370702..16370726 (25 bp)
TCCTATGCCTTTTATGCCGCTCTGT
LOC_Os07g28070
OsAffx.10110.2.S1_at--605--3671Chr07:16370710..16370734 (25 bp)
CTTTTATGCCGCTCTGTGCCAGAAA
LOC_Os07g28070
OsAffx.10110.2.S1_at--54--4531Chr07:16370717..16370741 (25 bp)
GCCGCTCTGTGCCAGAAACGGCAAT
LOC_Os07g28070
OsAffx.10110.2.S1_at--782--3391Chr07:16370729..16370753 (25 bp)
CAGAAACGGCAATCCACCTACTAGC
LOC_Os07g28070
OsAffx.10110.2.S1_at--739--9891Chr07:16370747..16370771 (25 bp)
TACTAGCCCACTGTAGGTTGTCGAA
LOC_Os07g28070
OsAffx.10110.2.S1_at--455--4551Chr07:16370752..16370776 (25 bp)
GCCCACTGTAGGTTGTCGAAGAGAA
LOC_Os07g28070
Target Sequence 
CCGGGTGTGGACTGTAGATAGACTCCAAGCGAGACAGTGGCCAAACCAACTCCTATGCCTTTTATGCCGCTCTGTGCCAG
AAACGGCAATCCACCTACTAGCCCACTGTAGGTTGTCGAAGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10110.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis