Browse Element(s) Details


Os.8265.1.S1_at

Description gb:AK067140.1
DB_XREF= gi:32977158
TID=Os.8265.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8265 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C74558(E31852),AU094839(E31852)~putative ATP-binding cassette, sub-family B, member 10, mitochondrial precursor (P0473C09.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013094I22, full insert sequence.
FL= gb:AK069799.1 gb:AK067140.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2809011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28050Os.54691.1.S1_x_at1/117+16351562..16361300O-methyltransferase family protein
LOC_Os07g28050OsAffx.10222.1.S1_x_at1/117+16351562..16361300O-methyltransferase family protein
LOC_Os07g28050OsAffx.6962.1.S1_at1/117+16351562..16361300O-methyltransferase family protein
LOC_Os07g28060NANA7+16366768..16367146ethylene receptor, putative
LOC_Os07g28070OsAffx.10110.2.S1_at10/117+16370273..16371024hypothetical protein
LOC_Os07g28080OsAffx.10110.3.S1_s_at11/117+16371189..16372233hypothetical protein
LOC_Os07g28090Os.8265.1.S1_at11/117+16373365..16385752ABC transporter family protein, expressed
LOC_Os07g28100NANA7+16392737..16393174hypothetical protein
LOC_Os07g28110OsAffx.22339.1.S1_at11/117+16394491..16396005Cytochrome P450 51, putative
LOC_Os07g28120OsAffx.1403.1.S1_at11/117+16397477..16401135retrotransposon protein, putative, unclassified
LOC_Os07g28120OsAffx.10108.1.S1_at11/117+16397477..16401135retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8265.1.S1_at--1043--10331Chr07:16385233..16385257 (25 bp)
TTTACACTCAAAACACCGAAGGTCT
LOC_Os07g28090
Os.8265.1.S1_at--893--5311Chr07:16385250..16385274 (25 bp)
GAAGGTCTCAATAGGCTGTGCTCAC
LOC_Os07g28090
Os.8265.1.S1_at--233--8351Chr07:16385263..16385287 (25 bp)
GGCTGTGCTCACAAAATCAATGTTG
LOC_Os07g28090
Os.8265.1.S1_at--337--8511Chr07:16385293..16385317 (25 bp)
TGGAACCGCAGTTTCCCCTATTGTC
LOC_Os07g28090
Os.8265.1.S1_at--583--10231Chr07:16385311..16385335 (25 bp)
TATTGTCCTGGGATGGCCAGCAATA
LOC_Os07g28090
Os.8265.1.S1_at--763--6631Chr07:16385346..16385370 (25 bp)
GTTGTATTTACCTGATCTGTTACAG
LOC_Os07g28090
Os.8265.1.S1_at--620--7171Chr07:16385428..16385452 (25 bp)
GTCGGATTTCCCGTGAAGTTATCAT
LOC_Os07g28090
Os.8265.1.S1_at--93--7511Chr07:16385585..16385609 (25 bp)
GTGGTCATTTGAGTTGTTCTGTGTA
LOC_Os07g28090
Os.8265.1.S1_at--527--6871Chr07:16385640..16385664 (25 bp)
GTATTGTCACTATACTTCCCTTTGA
LOC_Os07g28090
Os.8265.1.S1_at--1038--5152Chr07:16385680..16385704 (25 bp)
GCAAGCAGTATCATGGCCATACCCA
LOC_Os07g28090
Os.8265.1.S1_at--874--10811Chr07:16385728..16385752 (25 bp)
TTGTCTCATTGTCAGACTTGCTTCC
LOC_Os07g28090
Target Sequence 
TTTACACTCAAAACACCGAAGGTCTCAATAGGCTGTGCTCACAAAATCAATGTTGNGTTCTGGAACCGCAGTTTCCCCTA
TTGTCCTGGGATGGCCAGCAATATTTTGTTTANGTTGTATTTACCTGATCTGTTACAGAAGATCCAAAAGAAATAACACC
TCTTTTCCTTTTGGAAAGGAANAANCGTTATTTCCGTCGGATTTCCCGTGAAGTTATCATGAGTACAGAGGTTAGATAAT
AATGCAAGACCAATAATACAATTGCTGGTGAANTATGATGATGTTNAGATTCATTGTAGTAGAATATATCNTCACATTCG
GTACGAGATTGGTTTATTTACTGACGGAGGGAGTGGTCATTTGAGTTGTTCTGTGTAGTAAAGAATAGACTACATTATGT
AACTGTTGTATTGTCACTATACTTCCCTTTGACCACCTCCGTGTCAAGCAAGCAGTATCATGGCCATACCCAAAGGAAAC
GATGTAACAGTTCTATTGTCTCATTGTCAGACTTGCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8265.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis