Browse Element(s) Details


OsAffx.1403.1.S1_at

Description gb:NM_187213.1
DB_XREF= gi:34901511
GEN=P0473C09.11
TID=OsAffx.1403.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM etc. (P0473C09.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2812011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28090Os.8265.1.S1_at11/117+16373365..16385752ABC transporter family protein, expressed
LOC_Os07g28100NANA7+16392737..16393174hypothetical protein
LOC_Os07g28110OsAffx.22339.1.S1_at11/117+16394491..16396005Cytochrome P450 51, putative
LOC_Os07g28120OsAffx.1403.1.S1_at11/117+16397477..16401135retrotransposon protein, putative, unclassified
LOC_Os07g28120OsAffx.10108.1.S1_at11/117+16397477..16401135retrotransposon protein, putative, unclassified
LOC_Os07g28130Os.35344.18.S1_x_at10/117+16418179..16424077transposon protein, putative, Mutator sub-class
LOC_Os07g28130Os.35344.3.S1_x_at8/117+16418179..16424077transposon protein, putative, Mutator sub-class
LOC_Os07g28130OsAffx.22940.5.S1_x_at2/117+16418179..16424077transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1403.1.S1_at--193--1311Chr07:16398497..16398521 (25 bp)
AGATGAACTCCGACCTAGTGCTTTA
LOC_Os07g28120
OsAffx.1403.1.S1_at--129--7311Chr07:16398480..16398504 (25 bp)
GTGCTTTACGCTCTCATGGATGAAC
LOC_Os07g28120
OsAffx.1403.1.S1_at--523--671Chr07:16398461..16398485 (25 bp)
ATGAACTATTGGCTAGCTCTCTCGC
LOC_Os07g28120
OsAffx.1403.1.S1_at--19--511Chr07:16398433..16398457 (25 bp)
ATCGTGGGCGCTAGTTGACGGCCTT
LOC_Os07g28120
OsAffx.1403.1.S1_at--150--8251Chr07:16398408..16398432 (25 bp)
GGCACATTCCGATGCTGGCTATATG
LOC_Os07g28120
OsAffx.1403.1.S1_at--1028--4511Chr07:16398370..16398394 (25 bp)
GCCCCTCCTAGTGTCGATTGTGGAC
LOC_Os07g28120
OsAffx.1403.1.S1_at--124--3151Chr07:16398299..16398323 (25 bp)
AATTCAACAAGAACTTCCGCACGCC
LOC_Os07g28120
OsAffx.1403.1.S1_at--1093--4111Chr07:16398275..16398299 (25 bp)
CGCAAGCTCGCTGGGTGATTCAGGA
LOC_Os07g28120
OsAffx.1403.1.S1_at--833--991Chr07:16398254..16398278 (25 bp)
AGGATGAAATCGCTGTGTGCCTCCC
LOC_Os07g28120
OsAffx.1403.1.S1_at--856--1411Chr07:16398215..16398239 (25 bp)
AGACAAATCAACTACACCCAGCTGG
LOC_Os07g28120
OsAffx.1403.1.S1_at--344--2011Chr07:16398153..16398177 (25 bp)
ACTACTGTTGCCATGATTTCGTTGA
LOC_Os07g28120
Target Sequence 
AGATGAACTCCGACCTAGTGCTTTACGCTCTCATGGATGAACTATTGGCTAGCTCTCTCGCCGCATCGTGGGCGCTAGTT
GACGGCCTTGGCACATTCCGATGCTGGCTATATGTGCCATCCTCGTCGCCCCTCCTAGTGTCGATTGTGGACGGTATTCA
TGTAGACAGGGATGAGGGCATCAAGAAGATGTTGCACCAATTCAACAAGAACTTCCGCACGCCGCAAGCTCGCTGGGTGA
TTCAGGATGAAATCGCTGTGTGCCTCCCATATAAATGCAATAAGACAAATCAACTACACCCAGCTGGTCGACTGCTACCA
TTGCCAGTTCCCACTGCCTGGCCTACTACTGTTGCCATGATTTCGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis