Browse Element(s) Details


OsAffx.10110.3.S1_s_at

Description tigr:9635.m02724
TID=OsAffx.10110.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2808011/11hypothetical protein
LOC_Os11g254901/11hypothetical protein
LOC_Os02g195801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28040OsAffx.28637.1.S1_x_at11/117+16345121..16347785O-methyltransferase family protein, expressed
LOC_Os07g28050Os.54691.1.S1_x_at1/117+16351562..16361300O-methyltransferase family protein
LOC_Os07g28050OsAffx.10222.1.S1_x_at1/117+16351562..16361300O-methyltransferase family protein
LOC_Os07g28050OsAffx.6962.1.S1_at1/117+16351562..16361300O-methyltransferase family protein
LOC_Os07g28060NANA7+16366768..16367146ethylene receptor, putative
LOC_Os07g28070OsAffx.10110.2.S1_at10/117+16370273..16371024hypothetical protein
LOC_Os07g28080OsAffx.10110.3.S1_s_at11/117+16371189..16372233hypothetical protein
LOC_Os07g28090Os.8265.1.S1_at11/117+16373365..16385752ABC transporter family protein, expressed
LOC_Os07g28100NANA7+16392737..16393174hypothetical protein
LOC_Os07g28110OsAffx.22339.1.S1_at11/117+16394491..16396005Cytochrome P450 51, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10110.3.S1_s_at--429--836Chr08:9179478..9179500 (23 bp)
ATGGATTTATCAGGGCGTGACAAAT
NONE
OsAffx.10110.3.S1_s_at--676--10151Chr07:16371820..16371844 (25 bp)
TATCAGGGCGTGACAAATTCACCCC
LOC_Os07g28080
OsAffx.10110.3.S1_s_at--659--4291Chr07:16371844..16371868 (25 bp)
CCTACAAGAATCTCGCCCTTGAGAT
LOC_Os07g28080
OsAffx.10110.3.S1_s_at--377--451Chr07:16371853..16371877 (25 bp)
ATCTCGCCCTTGAGATTCGAAGGGT
LOC_Os07g28080
OsAffx.10110.3.S1_s_at--569--2311Chr07:16371881..16372116 (25 bp)
AAAGAAGCTTTTATCTGAGTTGCGA
LOC_Os07g28080
OsAffx.10110.3.S1_s_at--489--4891Chr07:16372098..16372122 (25 bp)
GCTTTTATCTGAGTTGCGAGCACTT
LOC_Os07g28080
OsAffx.10110.3.S1_s_at--325--471Chr07:16372104..16372128 (25 bp)
ATCTGAGTTGCGAGCACTTGGAGGT
LOC_Os07g28080
OsAffx.10110.3.S1_s_at--552--5111Chr07:16372117..16372141 (25 bp)
GCACTTGGAGGTGTTGCTTCAATTC
LOC_Os07g28080
OsAffx.10110.3.S1_s_at--206--6151Chr07:16372124..16372148 (25 bp)
GAGGTGTTGCTTCAATTCTGAGTCT
LOC_Os07g28080
OsAffx.10110.3.S1_s_at--506--6671Chr07:16372129..16372153 (25 bp)
GTTGCTTCAATTCTGAGTCTGAGAT
LOC_Os07g28080
OsAffx.10110.3.S1_s_at--1115--6091Chr07:16372143..16372167 (25 bp)
GAGTCTGAGATCTACAACATTTGTA
LOC_Os07g28080
Target Sequence 
ATGGATTTATCAGGGCGTGACAAATTCACCCCCTACAAGAATCTCGCCCTTGAGATTCGAAGGGTTAGAAAGAAGCTTTT
ATCTGAGTTGCGAGCACTTGGAGGTGTTGCTTCAATTCTGAGTCTGAGATCTACAACATTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10110.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis