Browse Element(s) Details


OsAffx.10277.1.S1_at

Description gb:NM_186183.1
DB_XREF= gi:34899451
GEN=OJ1123_C12.11
TID=OsAffx.10277.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1123_C12.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0203011/11Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01960OsAffx.16037.2.S1_at11/117+585901..586437hypothetical protein
LOC_Os07g01960OsAffx.16037.2.S1_s_at11/117+585901..586437hypothetical protein
LOC_Os07g01970OsAffx.22516.1.S1_at11/117+586973..587809retrotransposon protein, putative, unclassified
LOC_Os07g01990OsAffx.16038.1.S1_s_at11/117+602885..605785expressed protein
LOC_Os07g01990Os.18016.1.S1_at11/117+602885..605785expressed protein
LOC_Os07g02000Os.7514.1.S1_at11/117+605984..606947expressed protein
LOC_Os07g02030OsAffx.10277.1.S1_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02030OsAffx.10277.1.S1_x_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02030Os.9443.1.S1_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02040OsAffx.28227.1.S1_x_at10/117+621772..622759hypothetical protein
LOC_Os07g02040Os.50959.1.S1_at1/117+621772..622759hypothetical protein
LOC_Os07g02050NANA7+626147..626607retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g02060Os.38985.1.S1_at11/117+628861..632615WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0004737molecular_functionpyruvate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10277.1.S1_at--19--5732Chr07:610853..610877 (25 bp)
GACTCCTGCGGCTACTGGTCCAGCT
LOC_Os07g02030
OsAffx.10277.1.S1_at--756--9132Chr07:610859..610883 (25 bp)
TGCGGCTACTGGTCCAGCTGTCGCG
LOC_Os07g02030
OsAffx.10277.1.S1_at--452--4852Chr07:610863..610887 (25 bp)
GCTACTGGTCCAGCTGTCGCGTGAG
LOC_Os07g02030
OsAffx.10277.1.S1_at--970--1612Chr07:610874..610898 (25 bp)
AGCTGTCGCGTGAGCAGCCACGGTC
LOC_Os07g02030
OsAffx.10277.1.S1_at--288--4491Chr07:610975..611104 (25 bp)
GCCGGCTGCAGTCTCATGGTTTTTA
LOC_Os07g02030
OsAffx.10277.1.S1_at--995--4251Chr07:610976..611105 (25 bp)
CCGGCTGCAGTCTCATGGTTTTTAT
LOC_Os07g02030
OsAffx.10277.1.S1_at--172--3931Chr07:610977..611106 (25 bp)
CGGCTGCAGTCTCATGGTTTTTATT
LOC_Os07g02030
OsAffx.10277.1.S1_at--1135--8311Chr07:610978..611107 (25 bp)
GGCTGCAGTCTCATGGTTTTTATTA
LOC_Os07g02030
OsAffx.10277.1.S1_at--196--4771Chr07:610979..611108 (25 bp)
GCTGCAGTCTCATGGTTTTTATTAT
LOC_Os07g02030
OsAffx.10277.1.S1_at--408--3851Chr07:610980..611109 (25 bp)
CTGCAGTCTCATGGTTTTTATTATT
LOC_Os07g02030
OsAffx.10277.1.S1_at--399--5035Chr07:611090..611111 (22 bp)
GCAGTCTCATGGTTTTTATTATTTT
LOC_Os07g02030
Target Sequence 
GACTCCTGCGGCTACTGGTCCAGCTGTCGCGTGAGCAGCCACGGTCACCACCACGAGGCCGCGGAAGACGACGACCCGTC
GGAGAGGGAAGGCGGCAGCGAGGGCGCCGCCTCGCCGAGGTCGCCGGCTGCAGTCTCATGGTTTTTATTATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis