Browse Element(s) Details


OsAffx.10473.1.S1_at

Description gb:NM_184764.1
DB_XREF= gi:34896617
GEN=OSJNBa0026A15.23
TID=OsAffx.10473.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative transposon protein (OSJNBa0026A15.23), mRNA.
PROD=putative transposon protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3705011/11transposon protein, putative, Mutator sub-class
LOC_Os06g161304/11transposon protein, putative, Mutator sub-class
LOC_Os08g170403/11retrotransposon protein, putative, unclassified
LOC_Os09g141601/11transposon protein, putative, Mutator sub-class
LOC_Os12g188001/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37030NANA3+20484599..20485066hypothetical protein
LOC_Os03g37050OsAffx.10473.1.S1_at11/113+20500767..20502777transposon protein, putative, Mutator sub-class
LOC_Os03g37060OsAffx.22702.1.S1_at11/113+20503355..20504706transposon protein, putative, Mutator sub-class
LOC_Os03g37070OsAffx.10472.1.S1_at11/113+20505109..20505543Cytochrome P450 71E1, putative
LOC_Os03g37080OsAffx.25393.1.S1_at11/113+20506273..20512643Cytochrome P450 family protein
LOC_Os03g37080OsAffx.22701.1.S1_at7/113+20506273..20512643Cytochrome P450 family protein
LOC_Os03g37090Os.37371.1.S1_at10/113+20513407..20516312Uncharacterised protein family containing protein, expressed
LOC_Os03g37100Os.32970.1.S1_at11/113+20517953..20519695DTW domain containing protein, expressed
LOC_Os03g37110OsAffx.13205.1.S1_at10/113+20520864..20523154hypothetical protein
LOC_Os03g37120Os.33737.1.S1_at11/113+20523944..20527235transposon protein, putative, CACTA, En/Spm sub-class, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10473.1.S1_at--662--10711Chr03:20502053..20502077 (25 bp)
TTGCATGGCCATCAATTCTTGGGTT
LOC_Os03g37050
OsAffx.10473.1.S1_at--860--8133Chr08:10434228..10434251 (24 bp)
GGACAGGGTTATCAACAAGCTTAGA
LOC_Os08g17040
OsAffx.10473.1.S1_at--711--4772Chr08:10434270..10434294 (25 bp)
GCTGCTGCTCTAAAGAAGACTTTGG
LOC_Os08g17040
OsAffx.10473.1.S1_at--787--5331Chr03:20502152..20502176 (25 bp)
GAAGTATTTAATCACCCTGGTCATA
LOC_Os03g37050
OsAffx.10473.1.S1_at--482--8551Chr03:20502436..20502460 (25 bp)
TGGAGAGGACAATTGGCTTCAGCTA
LOC_Os03g37050
OsAffx.10473.1.S1_at--704--8431Chr03:20502495..20502519 (25 bp)
GGCCTATGCTGTCTTTGGATCTGAA
LOC_Os03g37050
OsAffx.10473.1.S1_at--1116--8993Chr08:10434700..10434724 (25 bp)
TGAATAAGGCAATTGGATCTCCAGA
LOC_Os08g17040
OsAffx.10473.1.S1_at--62--10832Chr06:9181587..9181611 (25 bp)
TTGGATCTCCAGAAGGCCTAGTACT
LOC_Os06g16130
OsAffx.10473.1.S1_at--690--8434Chr09:8383147..8383168 (22 bp)
GGCCTAGTACTGTCTACTGATGCAG
LOC_Os09g14160
OsAffx.10473.1.S1_at--715--3731Chr03:20502620..20502644 (25 bp)
CTACAGTGACAAGGGTGTTCAACAA
LOC_Os03g37050
OsAffx.10473.1.S1_at--113--5571Chr03:20502718..20502742 (25 bp)
GAAAGAAATCTGTGGCCTGCCTCAA
LOC_Os03g37050
Target Sequence 
TTGCATGGCCATCAATTCTTGGGTTAAGGACAGGGTTATCAACAAGCTTAGAGAAGATCCAACCATAGGGGCTGCTGCTC
TAAAGAAGACTTTGGAGGAGAAGTATTTAATCACCCTGGTCATACTATGTAGTATGGGATGGCCATATTTAGGCATTGAT
TCAACTGTGTTAACAGGCAAGTGGAGAGGACAATTGGCTTCAGCTATTGGTATAGATGGCCACAATTGGATGTTCCCTGT
GGCCTATGCTGTCTTTGGATCTGAAACAAAGGAAAACTGGGAATGGTTCATGGTTTGTTTGAATAAGGCAATTGGATCTC
CAGAAGGCCTAGTACTGTCTACTGATGCAGGCAAGGGCATAGATGCTACAGTGACAAGGGTGTTCAACAATGGAGTAGAG
CATAGAGAGTGCATGAGGCATTTGTACAAGAATTTTCAGAAAAGGTTCCATGGAGAAGTATTTGAAAGAAATCTGTGGCC
TGCCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis