Browse Element(s) Details


OsAffx.10527.1.S1_at

Description tigr:9629.m02797
TID=OsAffx.10527.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2914010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29110NANA1+16633378..16636648retrotransposon, putative, centromere-specific
LOC_Os01g29120NANA1+16638118..16638819retrotransposon, putative, centromere-specific
LOC_Os01g29130OsAffx.11252.1.S1_at11/111+16639649..16640294hypothetical protein
LOC_Os01g29130Os.17546.2.S1_x_at1/111+16639649..16640294hypothetical protein
LOC_Os01g29140OsAffx.10527.1.S1_at10/111+16643763..16644948hypothetical protein
LOC_Os01g29150Os.17265.2.S1_x_at11/111+16652726..16655240Cytochrome P450 family protein, expressed
LOC_Os01g29160NANA1+16666091..16667034retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29170OsAffx.21754.1.S1_x_at1/111+16669267..16670626retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10527.1.S1_at--735--98513Chr11:12361776..12361800 (25 bp)
TACAACTGGACCCACACGAAATGAA
NONE
OsAffx.10527.1.S1_at--1025--2691Chr01:16644835..16644859 (25 bp)
AAGCTACACACCCTGTCGAGTGCGT
LOC_Os01g29140
OsAffx.10527.1.S1_at--1074--1791Chr01:16644826..16644850 (25 bp)
ACCCTGTCGAGTGCGTTACGCGAGT
LOC_Os01g29140
OsAffx.10527.1.S1_at--1089--6772Chr07:15649672..15649696 (25 bp)
GTTACGCGAGTGATACAAGCTCATT
NONE
OsAffx.10527.1.S1_at--542--2694Chr10:5907123..5907147 (25 bp)
AAGCTCATTACATGCCTTTCCTAAT
NONE
OsAffx.10527.1.S1_at--18--5791NONE
GACGACTCAGTCACGGTACTGCTCG
NONE
OsAffx.10527.1.S1_at--1144--6991Chr01:16643985..16644009 (25 bp)
GTACTGCTCGTCACAGTCTGGAACA
LOC_Os01g29140
OsAffx.10527.1.S1_at--1107--1131Chr01:16643971..16643995 (25 bp)
AGTCTGGAACATCCGAATCTATCGA
LOC_Os01g29140
OsAffx.10527.1.S1_at--1006--252Chr07:15648842..15648866 (25 bp)
ATATGTGCATGCAACATGATCAGCA
NONE
OsAffx.10527.1.S1_at--942--5211Chr01:16643837..16643861 (25 bp)
GAATTATCACGCTTTCAGCCATGGT
LOC_Os01g29140
OsAffx.10527.1.S1_at--551--9672Chr07:15648748..15648772 (25 bp)
TCAGCCATGGTTTAGGAGCTACAAA
NONE
Target Sequence 
TACAACTGGACCCACACGAAATGAACAAGGATCAAAGCTACACACCCTGTCGAGTGCGTTACGCGAGTGATACAAGCTCA
TTACATGCCTTTCCTAATCCCACCCCAACCACCTATACCACGCCGGGGTTCCCGACGACTCAGTCACGGTACTGCTCGTC
ACAGTCTGGAACATCCGAATCTATCGAAAAGCAATATGCAAATAAGAACCAAATAAATATGTGCATGCAACATGATCAGC
AACTCAAGGCAAAAATACAGCGGGTAGGAGGTGTACTAAAGCTAATTTTGGTTAAAGAATTATCACGCTTTCAGCCATGG
TTTAGGAGCTACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10527.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis