Browse Element(s) Details


OsAffx.10964.1.S1_at

Description gb:NM_189534.1
DB_XREF= gi:34906151
GEN=P0509B06.13
TID=OsAffx.10964.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0509B06.13 (P0509B06.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0839011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08340Os.54294.1.S1_at11/111+4087875..4091623zinc finger family protein, putative, expressed
LOC_Os01g08350NANA1+4092658..4093051ATP synthase alpha chain, mitochondrial, putative
LOC_Os01g08360OsAffx.10833.1.S1_at5/111+4096185..4098684hypothetical protein
LOC_Os01g08370Os.29008.1.S1_at11/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08370Os.29008.1.S1_x_at11/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08370Os.29008.2.S1_at7/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08380OsAffx.9719.1.S1_x_at11/111+4107492..4108805Transferase family protein, expressed
LOC_Os01g08390OsAffx.10964.1.S1_at11/111+4113253..4113745hypothetical protein
LOC_Os01g08400Os.31960.1.S1_at11/111+4114843..4119183Syntaxin 32, putative, expressed
LOC_Os01g08410Os.12810.2.S1_x_at11/111+4120222..4123159expressed protein
LOC_Os01g08410Os.12810.1.S1_at11/111+4120222..4123159expressed protein
LOC_Os01g08420Os.980.1.S1_a_at10/111+4130505..4137434expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10964.1.S1_at--906--31Chr01:4113493..4113517 (25 bp)
ATTGGGTGCTGAATTTAGATGGGCT
LOC_Os01g08390
OsAffx.10964.1.S1_at--34--7591Chr01:4113513..4113537 (25 bp)
GGGCTGCAATTCTGTGTCACCCAAT
LOC_Os01g08390
OsAffx.10964.1.S1_at--185--7451Chr01:4113526..4113550 (25 bp)
GTGTCACCCAATATCGGACTCTAAG
LOC_Os01g08390
OsAffx.10964.1.S1_at--656--5231Chr01:4113550..4113574 (25 bp)
GAATAAGTCTGTTTTGCGTCTCTCA
LOC_Os01g08390
OsAffx.10964.1.S1_at--509--10711Chr01:4113563..4113587 (25 bp)
TTGCGTCTCTCAACTATTGCCATAG
LOC_Os01g08390
OsAffx.10964.1.S1_at--506--10211Chr01:4113577..4113601 (25 bp)
TATTGCCATAGGTCGAATCGTATCC
LOC_Os01g08390
OsAffx.10964.1.S1_at--1066--4913Chr12:19808657..19808677 (21 bp)
ATCGTATCCCTCAACCGTAAAATCG
NONE
OsAffx.10964.1.S1_at--1032--2171Chr01:4113612..4113636 (25 bp)
AAATCGGGTATATAGGCTCCTTCAA
LOC_Os01g08390
OsAffx.10964.1.S1_at--726--3791Chr01:4113659..4113683 (25 bp)
CTCCTCGAACGGTTTGAACGGCAGT
LOC_Os01g08390
OsAffx.10964.1.S1_at--1029--10251Chr01:4113671..4113695 (25 bp)
TTTGAACGGCAGTTTCGTCCTGAGT
LOC_Os01g08390
OsAffx.10964.1.S1_at--321--1211Chr01:4113681..4113705 (25 bp)
AGTTTCGTCCTGAGTGTCGCATTGA
LOC_Os01g08390
Target Sequence 
ATTGGGTGCTGAATTTAGATGGGCTGCAATTCTGTGTCACCCAATATCGGACTCTAAGAATAAGTCTGTTTTGCGTCTCT
CAACTATTGCCATAGGTCGAATCGTATCCCTCAACCGTAAAATCGGGTATATAGGCTCCTTCAACTATAAAAACCAAACC
AATTACCTCCTCGAACGGTTTGAACGGCAGTTTCGTCCTGAGTGTCGCATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis