Browse Element(s) Details


OsAffx.11115.1.S1_at

Description tigr:9638.m01117
TID=OsAffx.11115.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1233011/11helicase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12290Os.33792.1.S1_at11/1110+6601968..6606451expressed protein
LOC_Os10g12300Os.6046.1.S1_at7/1110+6611152..6611606hypothetical protein
LOC_Os10g12320OsAffx.24713.1.S1_x_at11/1110+6622461..6622799hypothetical protein
LOC_Os10g12330OsAffx.11115.1.S1_at11/1110+6625660..6629978helicase, putative
LOC_Os10g12354Os.46525.2.S1_x_at11/1110+6633645..6643454NUMOD3 motif family protein, expressed
LOC_Os10g12354Os.46525.1.S1_at11/1110+6633645..6643454NUMOD3 motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11115.1.S1_at--28--1051Chr10:6626155..6626179 (25 bp)
AGGTGAGCAGTTTTACTTGCGTATA
LOC_Os10g12330
OsAffx.11115.1.S1_at--1023--1971Chr10:6626128..6626152 (25 bp)
ACTGCATGTTGTCAAAGGCGCTCAA
LOC_Os10g12330
OsAffx.11115.1.S1_at--932--891Chr10:6626113..6626137 (25 bp)
AGGCGCTCAATCCTTTTCTGATGTA
LOC_Os10g12330
OsAffx.11115.1.S1_at--833--5811Chr10:6625917..6625941 (25 bp)
GACCCAGCCAAGTTGTTTGACAATA
LOC_Os10g12330
OsAffx.11115.1.S1_at--55--10711Chr10:6625868..6625892 (25 bp)
TTGCGTATCGTGTGTGCCAGCAGAC
LOC_Os10g12330
OsAffx.11115.1.S1_at--131--7291Chr10:6625855..6625879 (25 bp)
GTGCCAGCAGACACCTAGGATACAT
LOC_Os10g12330
OsAffx.11115.1.S1_at--344--5931Chr10:6625815..6625839 (25 bp)
GAGCATATCAGATTATCCACCCTAG
LOC_Os10g12330
OsAffx.11115.1.S1_at--593--6551Chr10:6625805..6625829 (25 bp)
GATTATCCACCCTAGCTGAATTGGA
LOC_Os10g12330
OsAffx.11115.1.S1_at--823--7951Chr10:6625761..6625785 (25 bp)
GGATACAGCTTGGATCACTTTCAGT
LOC_Os10g12330
OsAffx.11115.1.S1_at--533--371Chr10:6625748..6625772 (25 bp)
ATCACTTTCAGTTACCGCGGCTAAG
LOC_Os10g12330
OsAffx.11115.1.S1_at--958--3551Chr10:6625722..6625746 (25 bp)
CATCTTGCTTTTCCACCATTGGAGA
LOC_Os10g12330
Target Sequence 
AGGTGAGCAGTTTTACTTGCGTATATTACTGCATGTTGTCAAAGGCGCTCAATCCTTTTCTGATGTACGCACTGTTAGTG
GCATTCAATACCCAACTTTTCAATCTGCATGTGAAGAAATGGGGTTACTTGGCGATGATCGTGAATGGTCTCATGCTATC
ACTGATGCAGCACAGTGGGCGCTTCCATATCAACTTCGACAATTATTTGTCATGATGCTTCTATTTTACCAAGTATCAGA
CCCAGCCAAGTTGTTTGACAATAATGTTCAACTAATGGGTGAGGATTTTGCGTATCGTGTGTGCCAGCAGACACCTAGGA
TACATCAAAATATCCTTCAAGAGCATATCAGATTATCCACCCTAGCTGAATTGGATAGATTACTAAGAGATGTAGGATAC
AGCTTGGATCACTTTCAGTTACCGCGGCTAAGCCATCTTGCTTTTCCACCATTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis