Browse Element(s) Details


OsAffx.11115.3.S1_x_at

Description tigr:9629.m01900
TID=OsAffx.11115.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1946011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19430Os.36371.1.S1_at10/111+10987597..109883953'-5' exonuclease family protein, expressed
LOC_Os01g19440OsAffx.11114.1.S1_x_at11/111+10994371..10996072Pectinesterase family protein
LOC_Os01g19440OsAffx.11114.1.S1_at11/111+10994371..10996072Pectinesterase family protein
LOC_Os01g19450Os.8730.1.S1_at11/111+10996114..11002756ATP-citrate synthase subunit 1, putative, expressed
LOC_Os01g19460OsAffx.11115.3.S1_x_at11/111+11011027..11017142hypothetical protein
LOC_Os01g19470Os.11690.1.S1_at10/111+11022226..11035610Cna protein B-type domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11115.3.S1_x_at--916--1971Chr01:11016552..11016576 (25 bp)
ACTCGCTCCCGCTTATGGAAAAATT
LOC_Os01g19460
OsAffx.11115.3.S1_x_at--431--3171Chr01:11016612..11016636 (25 bp)
AATTGTCCAACCTTTTCTCAGCAAG
LOC_Os01g19460
OsAffx.11115.3.S1_x_at--396--8772Chr01:11016655..11016679 (25 bp)
TGTTTGCAACATGGCTTCTATCTTT
LOC_Os01g19460
OsAffx.11115.3.S1_x_at--675--8811Chr01:11016689..11016713 (25 bp)
TGTTGTCCATGATAGTGCACCCACT
LOC_Os01g19460
OsAffx.11115.3.S1_x_at--1085--412Chr01:11016746..11016770 (25 bp)
ATCATATCTCTTACTACCGGCTAAA
LOC_Os01g19460
OsAffx.11115.3.S1_x_at--1099--6551Chr01:11016807..11016831 (25 bp)
GATTCAATACCGCATCTATCACAGC
LOC_Os01g19460
OsAffx.11115.3.S1_x_at--212--171Chr01:11016903..11016927 (25 bp)
ATTATTAGCCACACAGCCACTGAAG
LOC_Os01g19460
OsAffx.11115.3.S1_x_at--406--6491Chr01:11016948..11016972 (25 bp)
GATACCATTGATGATGCCACACCAA
LOC_Os01g19460
OsAffx.11115.3.S1_x_at--1085--4291Chr01:11016992..11017016 (25 bp)
CCTTTATCCTGCAGAATTCCTCAAT
LOC_Os01g19460
OsAffx.11115.3.S1_x_at--1112--10271Chr01:11017034..11017058 (25 bp)
TTTGCCGGATCACCATTTACAGCTA
LOC_Os01g19460
OsAffx.11115.3.S1_x_at--1015--9831Chr01:11017057..11017081 (25 bp)
TAAAGATTGGTGTCCCCATCATGCT
LOC_Os01g19460
Target Sequence 
ACTCGCTCCCGCTTATGGAAAAATTGTGTGGTACTTGAATTAACTGAAAACATGAGGCTCAATTGTCCAACCTTTTCTCA
GCAAGACAAGTTTAGGCTTGAGCTGTTTGCAACATGGCTTCTATCTTTAGGTGATGGTGTTGTCCATGATAGTGCACCCA
CTGATCGACCAGACGCCACTTGGGTGGAGATTCCATCATATCTCTTACTACCGGCTAAAGAAAGGAACCTTGCATGTTTG
ATTTCTTTTGTGTATGATTCAATACCGCATCTATCACAGCTACCAACCTACTTATGTGAACATGCAATTTTGGCACCAAC
GAATGAGATTACTGCTGCTATAAATGCACAAATTATTAGCCACACAGCCACTGAAGAAATGTCATACTATAGCTTTGATA
CCATTGATGATGCCACACCAAACTACTGCAATGTGCAGTCCCTTTATCCTGCAGAATTCCTCAATACAGTACACATGAGT
GGTTTGCCGGATCACCATTTACAGCTAAAGATTGGTGTCCCCATCATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11115.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis