Browse Element(s) Details


Os.36371.1.S1_at

Description gb:AK063585.1
DB_XREF= gi:32973603
TID=Os.36371.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0487H02.22 (P0487H02.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-A04, full insert sequence.
FL= gb:AK063585.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1943010/113'-5' exonuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19380OsAffx.11113.1.S1_at11/111+10961778..10964851pentatricopeptide, putative
LOC_Os01g19390OsAffx.23307.1.S1_at11/111+10966109..10969659Acyltransferase family protein, expressed
LOC_Os01g19400Os.31119.1.S1_at11/111+10973963..10976748expressed protein
LOC_Os01g19410Os.12557.1.S1_at11/111+10977518..10980117expressed protein
LOC_Os01g19420Os.8035.1.S1_at11/111+10982871..10983769transposon protein, putative, unclassified, expressed
LOC_Os01g19430Os.36371.1.S1_at10/111+10987597..109883953'-5' exonuclease family protein, expressed
LOC_Os01g19440OsAffx.11114.1.S1_x_at11/111+10994371..10996072Pectinesterase family protein
LOC_Os01g19440OsAffx.11114.1.S1_at11/111+10994371..10996072Pectinesterase family protein
LOC_Os01g19450Os.8730.1.S1_at11/111+10996114..11002756ATP-citrate synthase subunit 1, putative, expressed
LOC_Os01g19460OsAffx.11115.3.S1_x_at11/111+11011027..11017142hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
GO:0005515molecular_functionprotein binding
GO:0008408molecular_function3'-5' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36371.1.S1_at--1140--8531Chr01:10987855..10987879 (25 bp)
TGGAGAAGCCGAGGCGCGTAACCAT
LOC_Os01g19430
Os.36371.1.S1_at--714--9911Chr01:10987769..10987793 (25 bp)
TACGTTTCCTACAAGCTGGGCGAGA
LOC_Os01g19430
Os.36371.1.S1_at--141--1071Chr01:10987745..10987769 (25 bp)
AGGGTCCTTGCCAACTGATCATGAT
LOC_Os01g19430
Os.36371.1.S1_at--107--8531Chr01:10987708..10987732 (25 bp)
TGGAACTATCCATGCACAACAGCAC
LOC_Os01g19430
Os.36371.1.S1_at--933--2131Chr01:10987690..10987714 (25 bp)
ACAGCACAAGTGGAGTAGTAGTTTT
LOC_Os01g19430
Os.36371.1.S1_at--212--10051Chr01:10987672..10987696 (25 bp)
TAGTTTTCTTTGTTGCTTTGGTCAC
LOC_Os01g19430
Os.36371.1.S1_at--103--10231Chr01:10987656..10987680 (25 bp)
TTTGGTCACCCCTGTATTCAGTGGT
LOC_Os01g19430
Os.36371.1.S1_at--534--4191Chr01:10987648..10987672 (25 bp)
CCCCTGTATTCAGTGGTGCTATATA
LOC_Os01g19430
Os.36371.1.S1_at--963--10451Chr01:10987621..10987645 (25 bp)
TTAGCCAATCGTTCTAACCTGGAAT
LOC_Os01g19430
Os.36371.1.S1_at--42--4031Chr01:10987612..10987636 (25 bp)
CGTTCTAACCTGGAATGCTATTCTA
LOC_Os01g19430
Os.36371.1.S1_at--898--9071Chr01:10987597..10987621 (25 bp)
TGCTATTCTAGTTTGTTGTTTCATC
NONE
Target Sequence 
TGGAGAAGCCGAGGCGCGTAACCATGAGCAACTGGGAGAAGCGGGAGCTGGACCCGGCGCAGGTCGAGTACGCCTGCATC
GACGCCTACGTTTCCTACAAGCTGGGCGAGAGGGTCCTTGCCAACTGATCATGATGCAGTGCAACTATGGAACTATCCAT
GCACAACAGCACAAGTGGAGTAGTAGTTTTCTTTGTTGCTTTGGTCACCCCTGTATTCAGTGGTGCTATATATGTTAGCC
AATCGTTCTAACCTGGAATGCTATTCTAGTTTGTTGTTTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis