Browse Element(s) Details


OsAffx.11113.1.S1_at

Description gb:NM_189182.1
DB_XREF= gi:34905447
GEN=P0487H02.18
TID=OsAffx.11113.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0487H02.18 (P0487H02.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1938011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19340OsAffx.11111.1.S1_x_at11/111+10942070..10942489hypothetical protein
LOC_Os01g19340OsAffx.11111.1.S1_at10/111+10942070..10942489hypothetical protein
LOC_Os01g19340OsAffx.26507.1.S1_x_at7/111+10942070..10942489hypothetical protein
LOC_Os01g19350NANA1+10947210..10947614hypothetical protein
LOC_Os01g19360OsAffx.19542.3.S1_x_at4/111+10949248..10953067retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19370OsAffx.11112.1.S1_at11/111+10957793..10959174expressed protein
LOC_Os01g19380OsAffx.11113.1.S1_at11/111+10961778..10964851pentatricopeptide, putative
LOC_Os01g19390OsAffx.23307.1.S1_at11/111+10966109..10969659Acyltransferase family protein, expressed
LOC_Os01g19400Os.31119.1.S1_at11/111+10973963..10976748expressed protein
LOC_Os01g19410Os.12557.1.S1_at11/111+10977518..10980117expressed protein
LOC_Os01g19420Os.8035.1.S1_at11/111+10982871..10983769transposon protein, putative, unclassified, expressed
LOC_Os01g19430Os.36371.1.S1_at10/111+10987597..109883953'-5' exonuclease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11113.1.S1_at--826--7771Chr01:10963189..10963213 (25 bp)
GGTGCATCCTGACCATGTTGTGTTC
LOC_Os01g19380
OsAffx.11113.1.S1_at--757--4331Chr01:10963201..10963225 (25 bp)
CCATGTTGTGTTCCTGAGCCTAATA
LOC_Os01g19380
OsAffx.11113.1.S1_at--92--8932Chr01:10963215..10963239 (25 bp)
TGAGCCTAATAAGTTCTTGCAGCCA
LOC_Os01g19380
OsAffx.11113.1.S1_at--397--10111Chr01:10963319..10963343 (25 bp)
TATGGTAGTGTCGTCAATCTCCTTG
LOC_Os01g19380
OsAffx.11113.1.S1_at--1008--3051Chr01:10963334..10963358 (25 bp)
AATCTCCTTGCTCGTGCTGGTAGGC
LOC_Os01g19380
OsAffx.11113.1.S1_at--29--4751Chr01:10963357..10963381 (25 bp)
GCTGAGAGAAGCCTTGGACCTAATT
LOC_Os01g19380
OsAffx.11113.1.S1_at--854--8091Chr01:10963372..10963396 (25 bp)
GGACCTAATTGATACGATGCCATTT
LOC_Os01g19380
OsAffx.11113.1.S1_at--722--6351Chr01:10963387..10963411 (25 bp)
GATGCCATTTGCTCCTGATGAATAT
LOC_Os01g19380
OsAffx.11113.1.S1_at--906--4931Chr01:10963426..10963450 (25 bp)
GCTTGGTGCCTCCAAGATGCATAAT
LOC_Os01g19380
OsAffx.11113.1.S1_at--1127--4531Chr01:10963677..10963701 (25 bp)
GCCCTCAAGTTTGTTTGGCAGATGA
LOC_Os01g19380
OsAffx.11113.1.S1_at--963--4951Chr01:10963708..10963732 (25 bp)
GCATATCTTGTCTCAACACATGGAT
LOC_Os01g19380
Target Sequence 
GGTGCATCCTGACCATGTTGTGTTCCTGAGCCTAATAAGTTCTTGCAGCCATGCTGGTTTAGTAGATGAAGGATGGAATT
TCTTCAGGTCAATGATAAATGAGTATAATTTGCAGCCTAACAAGGAGGTTTATGGTAGTGTCGTCAATCTCCTTGCTCGT
GCTGGTAGGCTGAGAGAAGCCTTGGACCTAATTGATACGATGCCATTTGCTCCTGATGAATATGTTTGGGGAGCATTGCT
TGGTGCCTCCAAGATGCATAATAATGTGGAGATGGGCAGACTAGCTGCAAGAAAGATCACTGAGATCAATCCTGATGATG
TGAAGAATTATATCATGCTTGCAAGTATATATGCTGCAGGTAGTAAATGGGGCGAGTATGCTTTTACAAGGAGGTCTTTG
AGAGGCATAGGGAGCAGGAAGGAGGCTGGAATCAGTTGGATAGAGNTNNNNNANNNNANGNANNNNNNNNNTGNNGCNNN
NNNTNNNAGCCCTCAAGTTTGTTTGGCAGATGAAGTATTGCATATCTTGTCTCAACACATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis