Browse Element(s) Details


OsAffx.11111.1.S1_at

Description tigr:9629.m01887
TID=OsAffx.11111.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1934010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19300OsAffx.31825.1.S1_x_at6/111+10919889..10920134hypothetical protein
LOC_Os01g19300OsAffx.31825.1.S1_at4/111+10919889..10920134hypothetical protein
LOC_Os01g19310OsAffx.15220.1.S1_s_at11/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310OsAffx.15220.2.S1_s_at11/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310Os.13877.1.S1_at6/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310Os.30832.2.S1_at1/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19320OsAffx.21973.2.A1_at11/111+10928402..10929839hypothetical protein
LOC_Os01g19320OsAffx.14321.1.S1_at1/111+10928402..10929839hypothetical protein
LOC_Os01g19330OsAffx.21972.1.S1_at11/111+10931766..10932647Cpm7, putative, expressed
LOC_Os01g19330Os.57514.1.S1_x_at1/111+10931766..10932647Cpm7, putative, expressed
LOC_Os01g19340OsAffx.11111.1.S1_x_at11/111+10942070..10942489hypothetical protein
LOC_Os01g19340OsAffx.11111.1.S1_at10/111+10942070..10942489hypothetical protein
LOC_Os01g19340OsAffx.26507.1.S1_x_at7/111+10942070..10942489hypothetical protein
LOC_Os01g19350NANA1+10947210..10947614hypothetical protein
LOC_Os01g19360OsAffx.19542.3.S1_x_at4/111+10949248..10953067retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19370OsAffx.11112.1.S1_at11/111+10957793..10959174expressed protein
LOC_Os01g19380OsAffx.11113.1.S1_at11/111+10961778..10964851pentatricopeptide, putative
LOC_Os01g19390OsAffx.23307.1.S1_at11/111+10966109..10969659Acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11111.1.S1_at--1130--4091Chr01:10942301..10942325 (25 bp)
CGACACGGTGGGGGATGCGATGGAT
LOC_Os01g19340
OsAffx.11111.1.S1_at--670--2171Chr01:10942303..10942327 (25 bp)
ACACGGTGGGGGATGCGATGGATGC
LOC_Os01g19340
OsAffx.11111.1.S1_at--452--4031Chr01:10942413..10942437 (25 bp)
CGTTGGATTTAGCGAACTGGCTCAT
LOC_Os01g19340
OsAffx.11111.1.S1_at--18--6631Chr01:10942414..10942438 (25 bp)
GTTGGATTTAGCGAACTGGCTCATA
LOC_Os01g19340
OsAffx.11111.1.S1_at--258--10871Chr01:10942415..10942439 (25 bp)
TTGGATTTAGCGAACTGGCTCATAC
LOC_Os01g19340
OsAffx.11111.1.S1_at--361--8571Chr01:10942416..10942440 (25 bp)
TGGATTTAGCGAACTGGCTCATACT
LOC_Os01g19340
OsAffx.11111.1.S1_at--1076--7931Chr01:10942417..10942441 (25 bp)
GGATTTAGCGAACTGGCTCATACTC
LOC_Os01g19340
OsAffx.11111.1.S1_at--535--6531Chr01:10942418..10942442 (25 bp)
GATTTAGCGAACTGGCTCATACTCC
LOC_Os01g19340
OsAffx.11111.1.S1_at--208--191Chr01:10942419..10942443 (25 bp)
ATTTAGCGAACTGGCTCATACTCCA
LOC_Os01g19340
OsAffx.11111.1.S1_at--961--10311Chr01:10942420..10942444 (25 bp)
TTTAGCGAACTGGCTCATACTCCAC
LOC_Os01g19340
Target Sequence 
CGACACGGTGGGGGATGCGATGGATGCGGCCGCGGCGGTGGATGTGATGGATGCGGGCGCTATCCCCCGATGTGTGAGGA
TGAGCCGAGCAGTTGGGTGCGGATCGTTGCGCCGTTGGATTTAGCGAACTGGCTCATACTCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis