Browse Element(s) Details


OsAffx.21973.2.A1_at

Description tigr:9629.m01885
TID=OsAffx.21973.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1932011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19290Os.31893.1.S1_at11/111+10908075..10911416integral membrane family protein, putative, expressed
LOC_Os01g19300OsAffx.31825.1.S1_x_at6/111+10919889..10920134hypothetical protein
LOC_Os01g19300OsAffx.31825.1.S1_at4/111+10919889..10920134hypothetical protein
LOC_Os01g19310OsAffx.15220.1.S1_s_at11/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310OsAffx.15220.2.S1_s_at11/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310Os.13877.1.S1_at6/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310Os.30832.2.S1_at1/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19320OsAffx.21973.2.A1_at11/111+10928402..10929839hypothetical protein
LOC_Os01g19320OsAffx.14321.1.S1_at1/111+10928402..10929839hypothetical protein
LOC_Os01g19330OsAffx.21972.1.S1_at11/111+10931766..10932647Cpm7, putative, expressed
LOC_Os01g19330Os.57514.1.S1_x_at1/111+10931766..10932647Cpm7, putative, expressed
LOC_Os01g19340OsAffx.11111.1.S1_x_at11/111+10942070..10942489hypothetical protein
LOC_Os01g19340OsAffx.11111.1.S1_at10/111+10942070..10942489hypothetical protein
LOC_Os01g19340OsAffx.26507.1.S1_x_at7/111+10942070..10942489hypothetical protein
LOC_Os01g19350NANA1+10947210..10947614hypothetical protein
LOC_Os01g19360OsAffx.19542.3.S1_x_at4/111+10949248..10953067retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21973.2.A1_at--942--3211Chr01:10929580..10929604 (25 bp)
CAAGGGTTGTTGTCACACGGTGCCG
LOC_Os01g19320
OsAffx.21973.2.A1_at--477--8811Chr01:10929587..10929611 (25 bp)
TGTTGTCACACGGTGCCGGCGTCCT
LOC_Os01g19320
OsAffx.21973.2.A1_at--1063--7251Chr01:10929607..10929631 (25 bp)
GTCCTGCTCTCGAGCTCGAGGATGG
LOC_Os01g19320
OsAffx.21973.2.A1_at--825--9371Chr01:10929616..10929640 (25 bp)
TCGAGCTCGAGGATGGCTTGCACGT
LOC_Os01g19320
OsAffx.21973.2.A1_at--903--1651Chr01:10929653..10929677 (25 bp)
AGCCGCCAGTCCCAAACTTGGAGTT
LOC_Os01g19320
OsAffx.21973.2.A1_at--744--4331Chr01:10929658..10929682 (25 bp)
CCAGTCCCAAACTTGGAGTTGCCTT
LOC_Os01g19320
OsAffx.21973.2.A1_at--1098--10531Chr01:10929681..10929705 (25 bp)
TTCTTGCCCGTTGAACCCGGTGTGT
LOC_Os01g19320
OsAffx.21973.2.A1_at--141--8991Chr01:10929692..10929716 (25 bp)
TGAACCCGGTGTGTCCGTCGTTGCA
LOC_Os01g19320
OsAffx.21973.2.A1_at--828--7731Chr01:10929699..10929723 (25 bp)
GGTGTGTCCGTCGTTGCACTGACTG
LOC_Os01g19320
OsAffx.21973.2.A1_at--521--4011Chr01:10929707..10929731 (25 bp)
CGTCGTTGCACTGACTGCCGGCGGA
LOC_Os01g19320
OsAffx.21973.2.A1_at--3--1411Chr01:10929743..10929767 (25 bp)
AGACGGCAGTGGCTGGGTGCAGAAC
LOC_Os01g19320
Target Sequence 
CAAGGGTTGTTGTCACACGGTGCCGGCGTCCTGCTCTCGAGCTCGAGGATGGCTTGCACGTCGCTGCAGAGCCAGCCGCC
AGTCCCAAACTTGGAGTTGCCTTCTTGCCCGTTGAACCCGGTGTGTCCGTCGTTGCACTGACTGCCGGCGGAGCCGAAGA
TGAAGACGGCAGTGGCTGGGTGCAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21973.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis