Browse Element(s) Details


OsAffx.31825.1.S1_at

Description gb:NM_183666.1
DB_XREF= gi:34894459
GEN=OSJNBa0025P13.25
TID=OsAffx.31825.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0025P13.25 (OSJNBa0025P13.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g193004/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19280OsAffx.11109.1.S1_at11/111+10895866..10897128hypothetical protein
LOC_Os01g19290Os.31893.1.S1_at11/111+10908075..10911416integral membrane family protein, putative, expressed
LOC_Os01g19300OsAffx.31825.1.S1_x_at6/111+10919889..10920134hypothetical protein
LOC_Os01g19300OsAffx.31825.1.S1_at4/111+10919889..10920134hypothetical protein
LOC_Os01g19310OsAffx.15220.1.S1_s_at11/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310OsAffx.15220.2.S1_s_at11/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310Os.13877.1.S1_at6/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310Os.30832.2.S1_at1/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19320OsAffx.21973.2.A1_at11/111+10928402..10929839hypothetical protein
LOC_Os01g19320OsAffx.14321.1.S1_at1/111+10928402..10929839hypothetical protein
LOC_Os01g19330OsAffx.21972.1.S1_at11/111+10931766..10932647Cpm7, putative, expressed
LOC_Os01g19330Os.57514.1.S1_x_at1/111+10931766..10932647Cpm7, putative, expressed
LOC_Os01g19340OsAffx.11111.1.S1_x_at11/111+10942070..10942489hypothetical protein
LOC_Os01g19340OsAffx.11111.1.S1_at10/111+10942070..10942489hypothetical protein
LOC_Os01g19340OsAffx.26507.1.S1_x_at7/111+10942070..10942489hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31825.1.S1_at--949--5731Chr01:10920042..10920066 (25 bp)
GACGGCCCGTGCGATATCGTCGGAT
LOC_Os01g19300
OsAffx.31825.1.S1_at--414--4111Chr01:10920007..10920031 (25 bp)
CGCAGCTGGAGATGGAACTTGAAGT
LOC_Os01g19300
OsAffx.31825.1.S1_at--853--1311Chr01:10919998..10920022 (25 bp)
AGATGGAACTTGAAGTCGCCCGCGA
LOC_Os01g19300
OsAffx.31825.1.S1_at--1083--6231Chr01:10919997..10920021 (25 bp)
GATGGAACTTGAAGTCGCCCGCGAC
LOC_Os01g19300
OsAffx.31825.1.S1_at--1143--5771Chr01:10919789..10919813 (25 bp)
GACGAGACCTCAGAACCCAAGCTAG
NONE
OsAffx.31825.1.S1_at--818--5991Chr01:10919789..10919810 (22 bp)
GAGACCTCAGAACCCAAGCTAGGCC
NONE
OsAffx.31825.1.S1_at--1116--5831Chr01:10919409..10919808 (25 bp)
GACCTCAGAACCCAAGCTAGGCCGT
NONE
OsAffx.31825.1.S1_at--128--9631Chr01:10919405..10919804 (25 bp)
TCAGAACCCAAGCTAGGCCGTGTGC
NONE
OsAffx.31825.1.S1_at--24--1451Chr01:10919403..10919802 (25 bp)
AGAACCCAAGCTAGGCCGTGTGCAG
NONE
OsAffx.31825.1.S1_at--289--5451Chr01:10919402..10919801 (25 bp)
GAACCCAAGCTAGGCCGTGTGCAGC
NONE
OsAffx.31825.1.S1_at--505--4871Chr01:10919394..10919414 (21 bp)
GCTAGGCCGTGTGCAGCGGAGGATC
NONE
Target Sequence 
GACGGCCCGTGCGATATCGTCGGATGGGAGGGTGGCGCAGCTGGAGATGGAACTTGAAGTCGCCCGCGACGACCTTCAGA
AGATGAATGAGATCGTGGCTGGCAACGAGATGCAACGTCTGGGGNTNNNGAAGANNNTNANCNNCCTNCANNANCNNNNC
TTNNNNNNCNGCGNNNAGTCTTCCATCCCTGCGCACCCCGACGAGACCTCAGAACCCAAGCTAGGCCGTGTGCAGCGGAG
GATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis