Browse Element(s) Details


OsAffx.11112.1.S1_at

Description tigr:9629.m01890
TID=OsAffx.11112.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1937011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19340OsAffx.11111.1.S1_x_at11/111+10942070..10942489hypothetical protein
LOC_Os01g19340OsAffx.11111.1.S1_at10/111+10942070..10942489hypothetical protein
LOC_Os01g19340OsAffx.26507.1.S1_x_at7/111+10942070..10942489hypothetical protein
LOC_Os01g19350NANA1+10947210..10947614hypothetical protein
LOC_Os01g19360OsAffx.19542.3.S1_x_at4/111+10949248..10953067retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19370OsAffx.11112.1.S1_at11/111+10957793..10959174expressed protein
LOC_Os01g19380OsAffx.11113.1.S1_at11/111+10961778..10964851pentatricopeptide, putative
LOC_Os01g19390OsAffx.23307.1.S1_at11/111+10966109..10969659Acyltransferase family protein, expressed
LOC_Os01g19400Os.31119.1.S1_at11/111+10973963..10976748expressed protein
LOC_Os01g19410Os.12557.1.S1_at11/111+10977518..10980117expressed protein
LOC_Os01g19420Os.8035.1.S1_at11/111+10982871..10983769transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11112.1.S1_at--597--3091Chr01:10958673..10958697 (25 bp)
CAATAGTTGGACTTATCTCGTTTTT
LOC_Os01g19370
OsAffx.11112.1.S1_at--466--1253Chr02:33803716..33803916 (25 bp)
AGATAACTAGATACTCCCTTCGTTT
NONE
OsAffx.11112.1.S1_at--486--6831Chr01:10958189..10958646 (25 bp)
GTTTCATAATTCTCTGGTGCTTTCC
LOC_Os01g19370
OsAffx.11112.1.S1_at--576--7771Chr01:10958174..10958198 (25 bp)
GGTGCTTTCCATGCCATTTCTTTTG
LOC_Os01g19370
OsAffx.11112.1.S1_at--2--9511Chr01:10958128..10958152 (25 bp)
TCTCCTCTCCTTTCGGATTCTAAAG
LOC_Os01g19370
OsAffx.11112.1.S1_at--1131--431Chr01:10958087..10958111 (25 bp)
ATCTTAGATGTCCTTCAGTTGGTCT
LOC_Os01g19370
OsAffx.11112.1.S1_at--1075--8591Chr01:10958068..10958092 (25 bp)
TGGTCTTGTTTCAGCTTCGTGGAAG
LOC_Os01g19370
OsAffx.11112.1.S1_at--437--8231Chr01:10957894..10957918 (25 bp)
GGCAAAGACGCAGTTGCCGTCATGT
LOC_Os01g19370
OsAffx.11112.1.S1_at--550--4011Chr01:10957877..10957901 (25 bp)
CGTCATGTTTGAGGCGATCTGGTTT
LOC_Os01g19370
OsAffx.11112.1.S1_at--903--5331Chr01:10957846..10957870 (25 bp)
GAAGTAGCATTCGACTTTCCCATGG
LOC_Os01g19370
OsAffx.11112.1.S1_at--601--7591Chr01:10957823..10957847 (25 bp)
GGGCATCTGTGCAACCAAAGCGTCA
LOC_Os01g19370
Target Sequence 
CAATAGTTGGACTTATCTCGTTTTTCGTACAGATAACTAGATACTCCCTTCGTTTCATAATTCTCTGGTGCTTTCCATGC
CATTTCTTTTGCTTTCCCTTTCCCCCATATTCTCTCCTCTCCTTTCGGATTCTAAAGGTAATAGACGATGATCATCTTAG
ATGTCCTTCAGTTGGTCTTGTTTCAGCTTCGTGGAAGCTAATGGAGGACAAAGATGATAGATTTTGCTACAACGGCAACA
AATATCGAAAAGGCAAAGACGCAGTTGCCGTCATGTTTGAGGCGATCTGGTTTGATGATGAAGTAGCATTCGACTTTCCC
ATGGGCATCTGTGCAACCAAAGCGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis