Browse Element(s) Details


Os.12557.1.S1_at

Description gb:AK065650.1
DB_XREF= gi:32975668
TID=Os.12557.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.12557 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013035N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035N22, full insert sequence.
FL= gb:AK065650.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1941011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19360OsAffx.19542.3.S1_x_at4/111+10949248..10953067retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19370OsAffx.11112.1.S1_at11/111+10957793..10959174expressed protein
LOC_Os01g19380OsAffx.11113.1.S1_at11/111+10961778..10964851pentatricopeptide, putative
LOC_Os01g19390OsAffx.23307.1.S1_at11/111+10966109..10969659Acyltransferase family protein, expressed
LOC_Os01g19400Os.31119.1.S1_at11/111+10973963..10976748expressed protein
LOC_Os01g19410Os.12557.1.S1_at11/111+10977518..10980117expressed protein
LOC_Os01g19420Os.8035.1.S1_at11/111+10982871..10983769transposon protein, putative, unclassified, expressed
LOC_Os01g19430Os.36371.1.S1_at10/111+10987597..109883953'-5' exonuclease family protein, expressed
LOC_Os01g19440OsAffx.11114.1.S1_x_at11/111+10994371..10996072Pectinesterase family protein
LOC_Os01g19440OsAffx.11114.1.S1_at11/111+10994371..10996072Pectinesterase family protein
LOC_Os01g19450Os.8730.1.S1_at11/111+10996114..11002756ATP-citrate synthase subunit 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12557.1.S1_at--37--9251Chr01:10979032..10979056 (25 bp)
TCCTCAATTGGCAACCTGGTAGCTT
LOC_Os01g19410
Os.12557.1.S1_at--1095--5171Chr01:10978182..10978203 (22 bp)
GCAAGGCTTGCCGATGAAATGAATT
LOC_Os01g19410
Os.12557.1.S1_at--7--7971Chr01:10978036..10978060 (25 bp)
GGATCACCTATATCATCAGGCCGAT
LOC_Os01g19410
Os.12557.1.S1_at--1131--8791Chr01:10977999..10978023 (25 bp)
TGTTCTCCATCCAGTTCTACAAGAA
LOC_Os01g19410
Os.12557.1.S1_at--814--1451Chr01:10977978..10978002 (25 bp)
AGAAGAATGAGACGGCTACCAGCCC
LOC_Os01g19410
Os.12557.1.S1_at--805--1471Chr01:10977717..10977741 (25 bp)
AGAATGAGTGCCGTAGCTGCCATCA
LOC_Os01g19410
Os.12557.1.S1_at--176--1991Chr01:10977693..10977717 (25 bp)
ACTGCCTTGGCCTTTTGGTGTCATC
LOC_Os01g19410
Os.12557.1.S1_at--467--7751Chr01:10977677..10977701 (25 bp)
GGTGTCATCCTGCTGTAAATTATGT
LOC_Os01g19410
Os.12557.1.S1_at--859--3991Chr01:10977638..10977662 (25 bp)
CGTGGTCTTTTAGCACTCCATAGAT
LOC_Os01g19410
Os.12557.1.S1_at--1106--8771Chr01:10977600..10977624 (25 bp)
TGTTTACTAATTGGCATTGCTGCTC
LOC_Os01g19410
Os.12557.1.S1_at--442--8691Chr01:10977575..10977599 (25 bp)
TGTGCTCTGAGTCAGCTTCTGTTAT
LOC_Os01g19410
Target Sequence 
TCCTCAATTGGCAACCTGGTAGCTTTGATTATTACCATTATCTTCTGCCTCGTCATACTTTGGCAAGGCTTGCCGATGAA
ATGAATTCACTGGGTTTTCTCAAAGTATGGGGCGGGCATTATCTTTCATGGATCACCTATATCATCAGGCCGATCACATG
GCAGCCTGTTCTCCATCCAGTTCTACAAGAAGAATGAGACGGCTACCAGCCCTCGGAGTTCTTCTTCAGCTCCAAACAAC
ACGGGAATAACAACGAGATTGGAGATCCATGGTGAAGCTAGGGGGGTTACAGAATGAGTGCCGTAGCTGCCATCACTGCC
TTGGCCTTTTGGTGTCATCCTGCTGTAAATTATGTTGAGTTGTTGTGGTCGTGGTCTTTTAGCACTCCATAGATTCCAAA
CTACAAGTGTTTACTAATTGGCATTGCTGCTCTGTGCTCTGAGTCAGCTTCTGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis