Browse Element(s) Details


OsAffx.11415.1.S1_at

Description tigr:9629.m03913
TID=OsAffx.11415.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4097011/11uncharacterized plant-specific domain TIGR01568 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40930OsAffx.11414.2.S1_x_at10/111+23480008..23483169hypothetical protein
LOC_Os01g40930OsAffx.11414.1.S1_at9/111+23480008..23483169hypothetical protein
LOC_Os01g40940OsAffx.2202.1.S1_x_at7/111+23489187..23490342hypothetical protein
LOC_Os01g40940Os.57295.1.S1_at1/111+23489187..23490342hypothetical protein
LOC_Os01g40950Os.57295.1.S1_at8/111+23494454..23495173hypothetical protein
LOC_Os01g40960OsAffx.23615.2.S1_s_at11/111+23498111..23498734MtN3/saliva family protein
LOC_Os01g40970OsAffx.11415.1.S1_at11/111+23500488..23501228uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os01g40980Os.33016.2.S1_x_at11/111+23501728..23513824DNA repair helicase family protein, expressed
LOC_Os01g40980Os.33016.3.S1_x_at10/111+23501728..23513824DNA repair helicase family protein, expressed
LOC_Os01g40990Os.8689.1.S1_at11/111+23516210..23540540expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11415.1.S1_at--545--8391Chr01:23500800..23500824 (25 bp)
GGCGACAACCATCAGCAGCGGCGAC
LOC_Os01g40970
OsAffx.11415.1.S1_at--845--391Chr01:23500877..23500901 (25 bp)
ATCATCAAGGTCAGAGTCGGTTGCA
LOC_Os01g40970
OsAffx.11415.1.S1_at--606--6911Chr01:23500948..23500972 (25 bp)
GTAGTACGGCCATAATGCTGTTCTC
LOC_Os01g40970
OsAffx.11415.1.S1_at--562--5911Chr01:23500977..23501001 (25 bp)
GATCCTTACACGGACTTCCGGAGAT
LOC_Os01g40970
OsAffx.11415.1.S1_at--434--8131Chr01:23500988..23501012 (25 bp)
GGACTTCCGGAGATCCATGCAGAAC
LOC_Os01g40970
OsAffx.11415.1.S1_at--737--7351Chr01:23501032..23501056 (25 bp)
GTGAGGAACCTCAGCCGTTGGACTG
LOC_Os01g40970
OsAffx.11415.1.S1_at--296--1651Chr01:23501044..23501068 (25 bp)
AGCCGTTGGACTGGGACTTCTTGGA
LOC_Os01g40970
OsAffx.11415.1.S1_at--1091--6171Chr01:23501067..23501091 (25 bp)
GAGGAGCTGCTCTTTTATTACCTGC
LOC_Os01g40970
OsAffx.11415.1.S1_at--41--10191Chr01:23501082..23501106 (25 bp)
TATTACCTGCAGCTCAATGAACAAA
LOC_Os01g40970
OsAffx.11415.1.S1_at--915--1171Chr01:23501116..23501140 (25 bp)
AGTACATTCTGAAGGCGTTCGCCGA
LOC_Os01g40970
OsAffx.11415.1.S1_at--677--5831Chr01:23501139..23501163 (25 bp)
GACCTTACTGCTGGAGCCCATGTCA
LOC_Os01g40970
Target Sequence 
GGCGACAACCATCAGCAGCGGCGACAACCACCACCATCTCCGGGGAAATTCACACAGCCAGCAGCGGCAGAGACATCATC
ATCAAGGTCAGAGTCGGTTGCAGAAGACGCAAGAGGAACAAGCTCGGGTGATGAAGACGACAACAACAGTAGTACGGCCA
TAATGCTGTTCTCCGTGGATCCTTACACGGACTTCCGGAGATCCATGCAGAACATAATAGAGATGCACCATGGTGAGGAA
CCTCAGCCGTTGGACTGGGACTTCTTGGAGGAGCTGCTCTTTTATTACCTGCAGCTCAATGAACAAAGTGTGCACAAGTA
CATTCTGAAGGCGTTCGCCGACCTTACTGCTGGAGCCCATGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis