Browse Element(s) Details


OsAffx.11426.1.S1_at

Description tigr:9629.m03958
TID=OsAffx.11426.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transmembrane amino acid transporter protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4140011/11Transmembrane amino acid transporter protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41380OsAffx.11424.1.S1_at11/111+23742330..23745070NA
LOC_Os01g41390NANA1+23750897..23751217hypothetical protein
LOC_Os01g41400OsAffx.11426.1.S1_at11/111+23766357..23768245Transmembrane amino acid transporter protein, expressed
LOC_Os01g41400OsAffx.27081.1.S1_x_at2/111+23766357..23768245Transmembrane amino acid transporter protein, expressed
LOC_Os01g41410OsAffx.23620.1.S1_at11/111+23769009..23769323hypothetical protein
LOC_Os01g41420Os.10355.1.S1_x_at4/111+23774032..23777783Transmembrane amino acid transporter protein, expressed
LOC_Os01g41420Os.10355.1.S1_at2/111+23774032..23777783Transmembrane amino acid transporter protein, expressed
LOC_Os01g41420Os.22840.1.A1_at1/111+23774032..23777783Transmembrane amino acid transporter protein, expressed
LOC_Os01g41430Os.10348.1.S1_at11/111+23782922..23784883UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g41440NANA1+23788034..23789476hypothetical protein
LOC_Os01g41450NANA1+23790584..23792033Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11426.1.S1_at--547--8751Chr01:23767108..23767132 (25 bp)
TGTACTCCTCAATGAGGGCCAGGAA
LOC_Os01g41400
OsAffx.11426.1.S1_at--385--5651Chr01:23767747..23767771 (25 bp)
GACAGCAGTGTTGGGATATAAGATC
LOC_Os01g41400
OsAffx.11426.1.S1_at--786--9731Chr01:23767765..23767789 (25 bp)
TAAGATCTACGGTGAGGATGTGCAG
LOC_Os01g41400
OsAffx.11426.1.S1_at--59--1011Chr01:23767832..23767856 (25 bp)
AGGATTGCCATCCTAACGACCCTGA
LOC_Os01g41400
OsAffx.11426.1.S1_at--1085--1651Chr01:23767890..23767914 (25 bp)
AGCCCGTCACGACCGCGATAGAGGA
LOC_Os01g41400
OsAffx.11426.1.S1_at--321--4671Chr01:23767937..23767961 (25 bp)
GCGGTAGCGGCTGATGCCGAAAACA
LOC_Os01g41400
OsAffx.11426.1.S1_at--230--5511Chr01:23767955..23767979 (25 bp)
GAAAACAATAGGCTAACCAGGGTGC
LOC_Os01g41400
OsAffx.11426.1.S1_at--909--2611Chr01:23767990..23768014 (25 bp)
AACCGTCGTCTTCAGCACGGTGGTG
LOC_Os01g41400
OsAffx.11426.1.S1_at--253--9611Chr01:23768046..23768070 (25 bp)
TCATGTCGTTCATCGGGTCCTCATT
LOC_Os01g41400
OsAffx.11426.1.S1_at--141--7711Chr01:23768060..23768084 (25 bp)
GGGTCCTCATTGAACGTCACTGTCG
LOC_Os01g41400
OsAffx.11426.1.S1_at--342--8671Chr01:23768187..23768211 (25 bp)
TGTGTGTCGCCGTCATTGGCACCTA
LOC_Os01g41400
Target Sequence 
TGTACTCCTCAATGAGGGCCAGGAAGGATTTTCCTAAGGTTTTGCTGATCTCTTCGGTGTTGTGCAGTCTCAACTACGCA
GTGACAGCAGTGTTGGGATATAAGATCTACGGTGAGGATGTGCAGGCGCAGGTGACACTAAACTTACCCACGGGAAAGCT
GTACACCAGGATTGCCATCCTAACGACCCTGATCACCCCACTGGCGAAGTACGCGCTCGTGATCCAGCCCGTCACGACCG
CGATAGAGGAGAAGCTGTCGACAGCGGCGGCGGCGGTAGCGGCTGATGCCGAAAACAATAGGCTAACCAGGGTGCTCACC
AGCACAACCGTCGTCTTCAGCACGGTGGTGCTGGCATGCACGGTGCCCTTCTTCGGCTACCTCATGTCGTTCATCGGGTC
CTCATTGAACGTCACTGTCGCCGTCCTGTTCCCGTGTCTGAGCTACCTCAAGATCTACATGCCTCGAGGAGGAGTTGGCC
GCTTCGAGGTGGCGGCGATCGTTGGGATACTGGTCATCGGAGTGTGTGTCGCCGTCATTGGCACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis