Browse Element(s) Details


OsAffx.11458.1.S1_s_at

Description gb:NM_192923.1
DB_XREF= gi:34912929
GEN=OSJNBb0035I14.3
TID=OsAffx.11458.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0035I14.3 (OSJNBb0035I14.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g245001/11hypothetical protein
LOC_Os07g239441/11Glycosyl hydrolases family 31 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24450NANA6+14325222..14327797retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g24460NANA6+14331375..14331900PDR-type ABC transporter 1, putative
LOC_Os06g24470OsAffx.4928.1.S1_at11/116+14336586..14338038hypothetical protein
LOC_Os06g24470OsAffx.8319.1.S1_x_at1/116+14336586..14338038hypothetical protein
LOC_Os06g24480NANA6+14341649..14342274hypothetical protein
LOC_Os06g24490Os.53277.1.S1_at11/116+14346072..14347227expressed protein
LOC_Os06g24500OsAffx.11458.1.S1_s_at1/116+14350929..14351618hypothetical protein
LOC_Os06g24510OsAffx.13241.1.S1_at1/116+14364345..14368020retrotransposon, putative, centromere-specific
LOC_Os06g24520OsAffx.15598.1.S1_at11/116+14370761..14371030hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0030244biological_processcellulose biosynthesis
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0015926molecular_functionglucosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11458.1.S1_s_at--455--9691Chr01:25477480..25477504 (25 bp)
TCACGTGACGACGAGGCATGCGCCG
NONE
OsAffx.11458.1.S1_s_at--1029--8211Chr01:25477521..25477545 (25 bp)
GGCAATCCGGGCTTTTTCGATTGTT
NONE
OsAffx.11458.1.S1_s_at--461--3995Chr05:20567466..20567491 (25 bp)
CGGGCTTTTTCGATTGTTTCTCTCT
NONE
OsAffx.11458.1.S1_s_at--930--10312Chr07:13535335..13535359 (25 bp)
TTTCTCTCTCCATGTTGTTCGGAAA
LOC_Os07g23944
OsAffx.11458.1.S1_s_at--285--311Chr01:25477579..25477603 (25 bp)
ATACCATTGGTGTCTAGTAGCTAAT
NONE
OsAffx.11458.1.S1_s_at--946--7737Chr07:7860116..7860137 (22 bp)
GGTGTCTAGTAGCTAATTACCATTC
NONE
OsAffx.11458.1.S1_s_at--583--131Chr01:25477602..25477626 (25 bp)
ATTACCATTCTTTTGCGGTGTCATA
NONE
OsAffx.11458.1.S1_s_at--937--4671Chr01:25477616..25477640 (25 bp)
GCGGTGTCATATAGCCAATTCATGT
NONE
OsAffx.11458.1.S1_s_at--412--3151Chr01:25477632..25477656 (25 bp)
AATTCATGTCTTTGCGGTATCCTAT
NONE
OsAffx.11458.1.S1_s_at--50--4691Chr01:25477645..25477669 (25 bp)
GCGGTATCCTATGACTAATTACATG
NONE
OsAffx.11458.1.S1_s_at--168--3151Chr01:25477661..25477685 (25 bp)
AATTACATGTTCTCGAGTGTCCTGT
NONE
Target Sequence 
TCACGTGACGACGAGGCATGCGCCGGTGCCGCGTGCGTGAGGGCAATCCGGGCTTTTTCGATTGTTTCTCTCTCCATGTT
GTTCGGAAATAATAAAATAATACCATTGGTGTCTAGTAGCTAATTACCATTCTTTTGCGGTGTCATATAGCCAATTCATG
TCTTTGCGGTATCCTATGACTAATTACATGTTCTCGAGTGTCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11458.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis