Browse Element(s) Details


OsAffx.11512.1.S1_at

Description tigr:9629.m04622
TID=OsAffx.11512.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4808011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48070NANA1+27856283..27857560retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g48080OsAffx.11512.1.S1_at11/111+27859761..27860405hypothetical protein
LOC_Os01g48090NANA1+27863565..27864842hypothetical protein
LOC_Os01g48100OsAffx.11513.1.S1_at11/111+27867816..27868313hypothetical protein
LOC_Os01g48110OsAffx.23705.1.S1_at11/111+27869266..27869800hypothetical protein
LOC_Os01g48120OsAffx.23706.1.S1_at11/111+27873667..27875087hypothetical protein
LOC_Os01g48130Os.9851.1.S1_at11/111+27882875..27887529no apical meristem, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11512.1.S1_at--255--5691Chr01:27859848..27859872 (25 bp)
GACTTCTACTCTTTCTCGGATGGAC
LOC_Os01g48080
OsAffx.11512.1.S1_at--711--3151Chr01:27860024..27860048 (25 bp)
CACTACCGGTTACTTTGATGCCCTT
LOC_Os01g48080
OsAffx.11512.1.S1_at--795--8851Chr01:27860039..27860063 (25 bp)
TGATGCCCTTCCAAGAACTGACGGT
LOC_Os01g48080
OsAffx.11512.1.S1_at--288--2331Chr01:27860085..27860109 (25 bp)
AAAGTAGCCTCATTCGTGGAAACCT
LOC_Os01g48080
OsAffx.11512.1.S1_at--189--111Chr01:27860096..27860120 (25 bp)
ATTCGTGGAAACCTACTGGCCGGAG
LOC_Os01g48080
OsAffx.11512.1.S1_at--760--6111Chr01:27860118..27860142 (25 bp)
GAGGGCCACACCAGGTTTGTCGGAT
LOC_Os01g48080
OsAffx.11512.1.S1_at--631--6251Chr01:27860140..27860164 (25 bp)
GATGGTGCTCCGACATTGAGATTTC
LOC_Os01g48080
OsAffx.11512.1.S1_at--480--6631Chr01:27860207..27860231 (25 bp)
GTTGTGGGACCCTAGTTCTGGTGAA
LOC_Os01g48080
OsAffx.11512.1.S1_at--520--2931Chr01:27860258..27860282 (25 bp)
AAGGAACAGGGTTGTGCTTGCTCGT
LOC_Os01g48080
OsAffx.11512.1.S1_at--288--2292Chr01:27860295..27860319 (25 bp)
AAATGGATGCCCTTGCAAACGCGAC
LOC_Os01g48080
OsAffx.11512.1.S1_at--621--8151Chr01:27860349..27860373 (25 bp)
GGACAATTCTACATGGTCACCTTAG
LOC_Os01g48080
Target Sequence 
GACTTCTACTCTTTCTCGGATGGACGGCGTCGCTCAATCACCCTGCCTTCCCCTGCCATCCAAAGCCGTATGTGGATTGG
CTCGGCGAAGGGTTGGCTTGTGACAACAGATGACAAGTGCGGGCTGCACCTCCTTAACCCCATCTCCGGCACTCAACACT
CGCTGCCATCCATCACCACTACCGGTTACTTTGATGCCCTTCCAAGAACTGACGGTGATGAAGCTAGGTTCTTGTTTAAA
GTAGCCTCATTCGTGGAAACCTACTGGCCGGAGGGCCACACCAGGTTTGTCGGATGGTGCTCCGACATTGAGATTTCTGC
GGAGGAAATCCGGTCATCTCGTCTCCTTAAAGCCGTCCCGTTGTGGGACCCTAGTTCTGGTGAATACTTTATCATGATGA
TGCATTGTCCAAGGAACAGGGTTGTGCTTGCTCGTGGGCGTGATGCAAAATGGATGCCCTTGCAAACGCGACACATGTAT
GAAGATGTGATCGTTTACCGAGGACAATTCTACATGGTCACCTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis