Browse Element(s) Details


OsAffx.11513.1.S1_at

Description tigr:9629.m04624
TID=OsAffx.11513.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4810011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48070NANA1+27856283..27857560retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g48080OsAffx.11512.1.S1_at11/111+27859761..27860405hypothetical protein
LOC_Os01g48090NANA1+27863565..27864842hypothetical protein
LOC_Os01g48100OsAffx.11513.1.S1_at11/111+27867816..27868313hypothetical protein
LOC_Os01g48110OsAffx.23705.1.S1_at11/111+27869266..27869800hypothetical protein
LOC_Os01g48120OsAffx.23706.1.S1_at11/111+27873667..27875087hypothetical protein
LOC_Os01g48130Os.9851.1.S1_at11/111+27882875..27887529no apical meristem, putative, expressed
LOC_Os01g48140OsAffx.11514.1.S1_x_at11/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48140OsAffx.11514.1.S1_at11/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48140OsAffx.11514.2.S1_at9/111+27892680..27897321pentatricopeptide, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11513.1.S1_at--26--8391Chr01:27867973..27867997 (25 bp)
GGCGACTGCTTCTTGGCGACGGTGG
LOC_Os01g48100
OsAffx.11513.1.S1_at--364--511Chr01:27868098..27868122 (25 bp)
ATCGACGGGACCACGACGACAAAGA
LOC_Os01g48100
OsAffx.11513.1.S1_at--89--5611Chr01:27868115..27868139 (25 bp)
GACAAAGAAGGCGTCCAAGGGTTCA
LOC_Os01g48100
OsAffx.11513.1.S1_at--993--3211Chr01:27868130..27868154 (25 bp)
CAAGGGTTCATATCGGCGGCAAGAA
LOC_Os01g48100
OsAffx.11513.1.S1_at--974--5291Chr01:27868152..27868176 (25 bp)
GAAGGCGGCCGGAATCCAAGAATGC
LOC_Os01g48100
OsAffx.11513.1.S1_at--414--4491Chr01:27868159..27868183 (25 bp)
GCCGGAATCCAAGAATGCACGAGTA
LOC_Os01g48100
OsAffx.11513.1.S1_at--164--9031Chr01:27868174..27868198 (25 bp)
TGCACGAGTACAACAAGAACGGCGA
LOC_Os01g48100
OsAffx.11513.1.S1_at--601--2571Chr01:27868191..27868215 (25 bp)
AACGGCGAGAAGTTTCGGAGCGCAC
LOC_Os01g48100
OsAffx.11513.1.S1_at--1106--991Chr01:27868198..27868222 (25 bp)
AGAAGTTTCGGAGCGCACGAGGTCC
LOC_Os01g48100
OsAffx.11513.1.S1_at--329--3251Chr01:27868231..27868255 (25 bp)
CAACCTCAAGAACGCGACCAGAGGC
LOC_Os01g48100
OsAffx.11513.1.S1_at--1073--3211Chr01:27868256..27868280 (25 bp)
CAAGAAGGCGGTTCCGAAGATCGGA
LOC_Os01g48100
Target Sequence 
GGCGACTGCTTCTTGGCGACGGTGGCGGCCCCAGCGTCCACGGCGGCGGCGGCCCCAGCGTCCACGGTGACGGCGGCGCC
CCCAACGTCCACGGCGACGGCTTCTTCGACGGCGGCGGCCCCAGCATCGACGGGACCACGACGACAAAGAAGGCGTCCAA
GGGTTCATATCGGCGGCAAGAAGGCGGCCGGAATCCAAGAATGCACGAGTACAACAAGAACGGCGAGAAGTTTCGGAGCG
CACGAGGTCCTGGCGGGGCAACCTCAAGAACGCGACCAGAGGCCAAGAAGGCGGTTCCGAAGATCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis