Browse Element(s) Details


OsAffx.11514.2.S1_at

Description tigr:9629.m04628
TID=OsAffx.11514.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g481409/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48100OsAffx.11513.1.S1_at11/111+27867816..27868313hypothetical protein
LOC_Os01g48110OsAffx.23705.1.S1_at11/111+27869266..27869800hypothetical protein
LOC_Os01g48120OsAffx.23706.1.S1_at11/111+27873667..27875087hypothetical protein
LOC_Os01g48130Os.9851.1.S1_at11/111+27882875..27887529no apical meristem, putative, expressed
LOC_Os01g48140OsAffx.11514.1.S1_x_at11/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48140OsAffx.11514.1.S1_at11/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48140OsAffx.11514.2.S1_at9/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48150NANA1+27898052..27898793expressed protein
LOC_Os01g48160OsAffx.23708.1.S1_at10/111+27904659..27905296hypothetical protein
LOC_Os01g48170NANA1+27908996..27909977Homeobox domain containing protein
LOC_Os01g48180Os.15936.2.S1_x_at11/111+27914225..27925679DDT domain containing protein, expressed
LOC_Os01g48180Os.15936.1.S1_at11/111+27914225..27925679DDT domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11514.2.S1_at--567--1211Chr01:27895636..27895660 (25 bp)
AGTTACGAGCAGTTGGCAGTGTTCA
LOC_Os01g48140
OsAffx.11514.2.S1_at--46--8271NONE
GGCAGTGTTCAGGAGTATAACCATG
NONE
OsAffx.11514.2.S1_at--220--10831Chr01:27894128..27894152 (25 bp)
TTGTGCTGCCGTTGCCAAGGTTGGA
LOC_Os01g48140
OsAffx.11514.2.S1_at--1127--6271Chr01:27894059..27894083 (25 bp)
GATGTTCTTATGTCTGGGCGATTGT
LOC_Os01g48140
OsAffx.11514.2.S1_at--1103--8351Chr01:27894043..27894067 (25 bp)
GGCGATTGTTTTCTGCATGGGCTCA
LOC_Os01g48140
OsAffx.11514.2.S1_at--660--731NONE
ATGTTGCTGGCGAGTTCAGTTCTTC
NONE
OsAffx.11514.2.S1_at--400--9651Chr01:27892799..27892823 (25 bp)
TCAGTTCTTCGTGGTAGCTTAGCTA
LOC_Os01g48140
OsAffx.11514.2.S1_at--316--10011Chr01:27892780..27892804 (25 bp)
TAGCTAGAGGTGGTATCACTCACAT
LOC_Os01g48140
OsAffx.11514.2.S1_at--237--9691Chr01:27892765..27892789 (25 bp)
TCACTCACATGGATACATCAGGTTC
LOC_Os01g48140
OsAffx.11514.2.S1_at--1132--391Chr01:27892749..27892773 (25 bp)
ATCAGGTTCAGTTAGGTACATGTAC
LOC_Os01g48140
OsAffx.11514.2.S1_at--397--7031Chr01:27892734..27892758 (25 bp)
GTACATGTACTCTATCGTGCGATAT
LOC_Os01g48140
Target Sequence 
AGTTACGAGCAGTTGGCAGTGTTCAGGAGTATAACCATGAGAAAAAGTCAACAGCCAAAATATCAAGTATTGAGATACAT
GCTACTGGGCCTTGTGCTGCCGTTGCCAAGGTTGGAGCCAGGAATTGGAAGACAGGGACAGTGTCTGAAGGAAGAAATTT
GATGTTCTTATGTCTGGGCGATTGTTTTCTGCATGGGCTCATGTTGCTGGCGAGTTCAGTTCTTCGTGGTAGCTTAGCTA
GAGGTGGTATCACTCACATGGATACATCAGGTTCAGTTAGGTACATGTACTCTATCGTGCGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11514.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis