Browse Element(s) Details


Os.15936.2.S1_x_at

Description gb:BI800572
DB_XREF= gi:16573276
DB_XREF=H014C08
CLONE=H014C08
TID=Os.15936.2
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15936 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0007F06.8 (P0007F06.8), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4818011/11DDT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48140OsAffx.11514.1.S1_x_at11/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48140OsAffx.11514.1.S1_at11/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48140OsAffx.11514.2.S1_at9/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48150NANA1+27898052..27898793expressed protein
LOC_Os01g48160OsAffx.23708.1.S1_at10/111+27904659..27905296hypothetical protein
LOC_Os01g48170NANA1+27908996..27909977Homeobox domain containing protein
LOC_Os01g48180Os.15936.2.S1_x_at11/111+27914225..27925679DDT domain containing protein, expressed
LOC_Os01g48180Os.15936.1.S1_at11/111+27914225..27925679DDT domain containing protein, expressed
LOC_Os01g48190Os.10606.1.S1_a_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48190Os.10606.3.S1_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48190Os.10606.3.S1_x_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48200Os.26492.1.S1_at10/111+27932819..27935524glycosyl transferase family 48 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15936.2.S1_x_at--668--1251Chr01:27925086..27925110 (25 bp)
AGATTATTCTAGAGGCTATTCTGGT
LOC_Os01g48180
Os.15936.2.S1_x_at--194--6211Chr01:27925097..27925121 (25 bp)
GAGGCTATTCTGGTGGCTCCAGGCC
LOC_Os01g48180
Os.15936.2.S1_x_at--192--9231Chr01:27925114..27925138 (25 bp)
TCCAGGCCCCATGGCATGATAGATG
LOC_Os01g48180
Os.15936.2.S1_x_at--882--6931Chr01:27925366..27925390 (25 bp)
GTAGAGGCCTTAGCGTCCTATGCCG
LOC_Os01g48180
Os.15936.2.S1_x_at--169--7231Chr01:27925380..27925404 (25 bp)
GTCCTATGCCGTTATCCCTAAATTT
LOC_Os01g48180
Os.15936.2.S1_x_at--605--371Chr01:27925420..27925444 (25 bp)
ATCAAGTACTGTTAGTGGGCATTAC
LOC_Os01g48180
Os.15936.2.S1_x_at--500--8651Chr01:27925435..27925459 (25 bp)
TGGGCATTACTTGCCCTTGTGGTTA
LOC_Os01g48180
Os.15936.2.S1_x_at--259--9811Chr01:27925458..27925482 (25 bp)
TAAAATGCTAGACGCGGACCAGAGG
LOC_Os01g48180
Os.15936.2.S1_x_at--338--10091Chr01:27925496..27925520 (25 bp)
TAGGCATGTAGTACTGATGTTCAGT
LOC_Os01g48180
Os.15936.2.S1_x_at--1157--5851Chr01:27925553..27925577 (25 bp)
GAGCTGCCCAAACAACCGGGTAGTG
LOC_Os01g48180
Os.15936.2.S1_x_at--1077--3871Chr01:27925583..27925607 (25 bp)
CTGTACTTTGCTGGTTTAAGGTGTT
LOC_Os01g48180
Target Sequence 
AGATTATTCTAGAGGCTATTCTGGTGGCTCCAGGCCCCATGGCATGATAGATGATGATGTGAGCGAAGAAGAGGATGAAG
ATGTGGAGGGCGATGATGATGGGGAGGAAGATGATGCGGACNGNGNNGNNGATGATGNNGANGCTGAGATGGACGAGGAT
GATGANATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCTGATGAAGATGAAGGCGG
TTCCTNGTATTNATNGGAGTNCAGCGACTAAGATTGGCCNGTAGAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTC
CNATAGANGTNTGAATCAAGTACTGTTAGTGGGCATTACTTGCCCTTGTGGTTAAAATGCTAGACGCGGACCAGAGGTNT
GTGTGATAGATAGGCATGTAGTACTGATGTTCAGTNCTGCATGCTTNTTTTGATTTTNGGNGTAGCCGAGCTGCCCAAAC
AACCGGGTAGTGTGAANCTGTACTTTGCTGGTTTAAGGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15936.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis