Browse Element(s) Details


Os.15936.1.S1_at

Description gb:AK107129.1
DB_XREF= gi:32992338
TID=Os.15936.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15936 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0007F06.8 (P0007F06.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C03, full insert sequence.
FL= gb:AK107129.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4818011/11DDT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48140OsAffx.11514.1.S1_x_at11/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48140OsAffx.11514.1.S1_at11/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48140OsAffx.11514.2.S1_at9/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48150NANA1+27898052..27898793expressed protein
LOC_Os01g48160OsAffx.23708.1.S1_at10/111+27904659..27905296hypothetical protein
LOC_Os01g48170NANA1+27908996..27909977Homeobox domain containing protein
LOC_Os01g48180Os.15936.2.S1_x_at11/111+27914225..27925679DDT domain containing protein, expressed
LOC_Os01g48180Os.15936.1.S1_at11/111+27914225..27925679DDT domain containing protein, expressed
LOC_Os01g48190Os.10606.1.S1_a_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48190Os.10606.3.S1_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48190Os.10606.3.S1_x_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48200Os.26492.1.S1_at10/111+27932819..27935524glycosyl transferase family 48 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15936.1.S1_at--904--2791Chr01:27925193..27925217 (25 bp)
AAGATGATGCGGACCGTGCAGTTGA
LOC_Os01g48180
Os.15936.1.S1_at--680--3951Chr01:27925202..27925226 (25 bp)
CGGACCGTGCAGTTGATGATGTTGA
LOC_Os01g48180
Os.15936.1.S1_at--249--671Chr01:27925316..27925340 (25 bp)
ATGAAGGCGGTTCCTCGTATTCATC
LOC_Os01g48180
Os.15936.1.S1_at--964--7891Chr01:27925324..27925348 (25 bp)
GGTTCCTCGTATTCATCGGAGTACA
LOC_Os01g48180
Os.15936.1.S1_at--481--6871Chr01:27925332..27925356 (25 bp)
GTATTCATCGGAGTACAGCGACTAA
LOC_Os01g48180
Os.15936.1.S1_at--925--3531Chr01:27925337..27925361 (25 bp)
CATCGGAGTACAGCGACTAAGATTG
LOC_Os01g48180
Os.15936.1.S1_at--306--10132Chr01:27925392..27925416 (25 bp)
TATCCCTAAATTTCCAATAGATGTC
LOC_Os01g48180
Os.15936.1.S1_at--581--3091Chr01:27925407..27925431 (25 bp)
AATAGATGTCTGAATCAAGTACTGT
LOC_Os01g48180
Os.15936.1.S1_at--324--7011Chr01:27925519..27925543 (25 bp)
GTACTGCATGCTTCTTTTGATTTTC
LOC_Os01g48180
Os.15936.1.S1_at--539--9051Chr01:27925523..27925547 (25 bp)
TGCATGCTTCTTTTGATTTTCGGCG
LOC_Os01g48180
Os.15936.1.S1_at--1078--7271Chr01:27925626..27925650 (25 bp)
GTGCCAAGGCAAAGTACCAAGTTTA
LOC_Os01g48180
Target Sequence 
AAGATGATGCGGACCGTGCAGTTGATGATGTTGATGCTGAGATGGACGAGGATGATGATATAGGTGATGATGGTGAGGAT
GGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCTGATGAAGATGAAGGCGGTTCCTCGTATTCATCGGAGTACAGCGA
CTAAGATTGGCCAGTAGAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCAATAGATGTCTGAATCAAGTACTGTT
AGTGGGCATTACTTACCCTTGTGGTTAAAATGCTAGACGCGGACCAGAGGTCTGTGTGATAGATAGGCATGTAGTACTGA
TGTTCAGTACTGCATGCTTCTTTTGATTTTCGGCGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAGCTGTACTTTG
CTGGTTTAAGGTGTTGGGATTGATGCGTACAATGTGCCAAGGCAAAGTACCAAGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis