Browse Element(s) Details


OsAffx.23708.1.S1_at

Description tigr:9629.m04630
TID=OsAffx.23708.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4816010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48130Os.9851.1.S1_at11/111+27882875..27887529no apical meristem, putative, expressed
LOC_Os01g48140OsAffx.11514.1.S1_x_at11/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48140OsAffx.11514.1.S1_at11/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48140OsAffx.11514.2.S1_at9/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48150NANA1+27898052..27898793expressed protein
LOC_Os01g48160OsAffx.23708.1.S1_at10/111+27904659..27905296hypothetical protein
LOC_Os01g48170NANA1+27908996..27909977Homeobox domain containing protein
LOC_Os01g48180Os.15936.2.S1_x_at11/111+27914225..27925679DDT domain containing protein, expressed
LOC_Os01g48180Os.15936.1.S1_at11/111+27914225..27925679DDT domain containing protein, expressed
LOC_Os01g48190Os.10606.1.S1_a_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48190Os.10606.3.S1_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48190Os.10606.3.S1_x_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23708.1.S1_at--385--3591NONE
CATTTTCATTTTGGACATGTGGGAG
NONE
OsAffx.23708.1.S1_at--764--8131Chr01:27904712..27905170 (25 bp)
GGACATGTGGGAGTTATCTGAGAAT
LOC_Os01g48160
OsAffx.23708.1.S1_at--1101--8851Chr01:27905176..27905200 (25 bp)
TGATGAGGCGATGCTTCAGGGCTAC
LOC_Os01g48160
OsAffx.23708.1.S1_at--1087--8871Chr01:27905179..27905203 (25 bp)
TGAGGCGATGCTTCAGGGCTACGAC
LOC_Os01g48160
OsAffx.23708.1.S1_at--867--8371Chr01:27905182..27905206 (25 bp)
GGCGATGCTTCAGGGCTACGACAAT
LOC_Os01g48160
OsAffx.23708.1.S1_at--671--9071Chr01:27905187..27905211 (25 bp)
TGCTTCAGGGCTACGACAATGGAGT
LOC_Os01g48160
OsAffx.23708.1.S1_at--52--8311Chr01:27905195..27905219 (25 bp)
GGCTACGACAATGGAGTGGGTCATA
LOC_Os01g48160
OsAffx.23708.1.S1_at--277--4111Chr01:27905200..27905224 (25 bp)
CGACAATGGAGTGGGTCATAGATGT
LOC_Os01g48160
OsAffx.23708.1.S1_at--26--6271Chr01:27905220..27905244 (25 bp)
GATGTGGTAGCAGGAGACACTACAA
LOC_Os01g48160
OsAffx.23708.1.S1_at--80--5991Chr01:27905233..27905257 (25 bp)
GAGACACTACAAAAAGATCGCGAGC
LOC_Os01g48160
OsAffx.23708.1.S1_at--892--3271Chr01:27905242..27905266 (25 bp)
CAAAAAGATCGCGAGCTCAACACCA
LOC_Os01g48160
Target Sequence 
CATTTTCATTTTGGACATGTGGGAGTTATCTGAGAATGGTGGTGATGAGGCGATGCTTCAGGGCTACGACAATGGAGTGG
GTCATAGATGTGGTAGCAGGAGACACTACAAAAAGATCGCGAGCTCAACACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis