Browse Element(s) Details


OsAffx.11563.1.S1_at

Description tigr:9629.m05007
TID=OsAffx.11563.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5166010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51630Os.33073.1.S2_s_at11/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51630Os.33073.1.S1_s_at11/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51630Os.50543.1.S1_x_at1/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51640Os.13766.1.S1_at11/111+30005938..30009857expressed protein
LOC_Os01g51650OsAffx.21543.1.S1_at11/111+30012289..30019007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g51650OsAffx.655.1.S1_x_at2/111+30012289..30019007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g51660OsAffx.11563.1.S1_at10/111+30022688..30023250hypothetical protein
LOC_Os01g51670Os.37243.1.S1_at11/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_x_at9/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_at1/111+30035223..30036213expressed protein
LOC_Os01g51680OsAffx.23752.1.S1_at11/111+30044626..30045193hypothetical protein
LOC_Os01g51690Os.30634.1.S1_at10/111+30047770..30049912WRKY DNA binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11563.1.S1_at--269--7231Chr01:30022742..30022766 (25 bp)
GTCCTTGCCTTCACGGTTATCGGTG
LOC_Os01g51660
OsAffx.11563.1.S1_at--160--1911Chr01:30022754..30022778 (25 bp)
ACGGTTATCGGTGTGGTCTCCGACG
LOC_Os01g51660
OsAffx.11563.1.S1_at--959--4451Chr01:30022895..30022919 (25 bp)
GCCGAGGCTAGGAGGGCAAGGCTCA
LOC_Os01g51660
OsAffx.11563.1.S1_at--184--1931NONE
ACGGTCCACGCCGATGTGCGATGGA
NONE
OsAffx.11563.1.S1_at--649--9211Chr01:30022973..30022997 (25 bp)
TCCACGCCGATGTGCGATGGAACGG
LOC_Os01g51660
OsAffx.11563.1.S1_at--521--5091Chr01:30023026..30023050 (25 bp)
GCACCGGCATTGGCAGCGACAGTCG
LOC_Os01g51660
OsAffx.11563.1.S1_at--517--3911Chr01:30023063..30023087 (25 bp)
CTGGAGCGGCTGCAGTCGGGAGGAC
LOC_Os01g51660
OsAffx.11563.1.S1_at--392--5771Chr01:30023095..30023119 (25 bp)
GACGCTATAGATGCCGAGGGAGCCC
LOC_Os01g51660
OsAffx.11563.1.S1_at--606--1292Chr07:9533218..9533242 (25 bp)
AGATGCCGAGGGAGCCCTCCCCGAT
NONE
OsAffx.11563.1.S1_at--417--1391Chr01:30023159..30023183 (25 bp)
AGACGAGCTCCCAGGCGGCGCAGGT
LOC_Os01g51660
OsAffx.11563.1.S1_at--1070--7291Chr01:30023182..30023206 (25 bp)
GTGCGACAGCAGATGGTCGGGCCGC
LOC_Os01g51660
Target Sequence 
GTCCTTGCCTTCACGGTTATCGGTGTGGTCTCCGACGGCTCGCGAGTCGCTGGACCACATCTCCATCAACTGCACCGGCG
GGGTCGGGGCCACCTTCGGCTGCCGCTCCGTCTACTCGCGCCGTTTAGCACCGACGAGGAGGGCGGCGAGGAGGCCGAGG
CTAGGAGGGCAAGGCTCACCGCGTGCGCCGACTCCATCTCCACGGTCCACGCCGATGTGCGATGGAACGGCAGCGACGGC
GGGTGCGCAAGGGCTGGAGCACCGGCATTGGCAGCGACAGTCGGGAGGACGGGAGCTGGAGCGGCTGCAGTCGGGAGGAC
GGGCGGCGACGCTATAGATGCCGAGGGAGCCCTCCCCGATGCGCTCCTGCCGAGCACCAGATGGCCGGTGCAGACGAGCT
CCCAGGCGGCGCAGGTGCGACAGCAGATGGTCGGGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis