Browse Element(s) Details


OsAffx.11611.1.S1_at

Description tigr:9629.m05393
TID=OsAffx.11611.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5525011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55240Os.21634.1.S1_at11/111+32121953..32124472Gibberellin 2-beta-dioxygenase, putative, expressed
LOC_Os01g55250OsAffx.11611.1.S1_at11/111+32126750..32127562hypothetical protein
LOC_Os01g55260Os.9238.1.A2_at11/111+32133810..32138711ATPase, AAA family protein, expressed
LOC_Os01g55260Os.9238.1.A1_a_at10/111+32133810..32138711ATPase, AAA family protein, expressed
LOC_Os01g55270Os.9238.2.S1_at11/111+32138193..32141441SGS domain containing protein, expressed
LOC_Os01g55280Os.26380.2.S1_x_at11/111+32142365..32143622expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11611.1.S1_at--293--6151Chr01:32126812..32127304 (25 bp)
GAGGTACTTGGCACGGCAGCAGAAA
LOC_Os01g55250
OsAffx.11611.1.S1_at--120--8251Chr01:32126821..32127313 (25 bp)
GGCACGGCAGCAGAAACGATATATG
LOC_Os01g55250
OsAffx.11611.1.S1_at--648--5531Chr01:32127301..32127325 (25 bp)
GAAACGATATATGGCTGAGGAAGAA
LOC_Os01g55250
OsAffx.11611.1.S1_at--1025--871Chr01:32127326..32127350 (25 bp)
AGGCCATTGAAGACAACCGTACCAC
LOC_Os01g55250
OsAffx.11611.1.S1_at--570--5931Chr01:32127357..32127381 (25 bp)
GAGCAGGAGCCATCCAGCTAGGTTA
LOC_Os01g55250
OsAffx.11611.1.S1_at--898--571Chr01:32127368..32127392 (25 bp)
ATCCAGCTAGGTTACCATTCGCGTA
LOC_Os01g55250
OsAffx.11611.1.S1_at--214--4851Chr01:32127373..32127397 (25 bp)
GCTAGGTTACCATTCGCGTAGTAAA
LOC_Os01g55250
OsAffx.11611.1.S1_at--1083--10631Chr01:32127385..32127409 (25 bp)
TTCGCGTAGTAAAGGCGGCGCCAGC
LOC_Os01g55250
OsAffx.11611.1.S1_at--650--4411Chr01:32127404..32127428 (25 bp)
GCCAGCGGACTGTACGACCCGCAAT
LOC_Os01g55250
OsAffx.11611.1.S1_at--998--6012Chr01:32127461..32127485 (25 bp)
GAGAGGGCAAAAGCTGTGTCAAACA
LOC_Os01g55250
OsAffx.11611.1.S1_at--545--7031Chr01:32127478..32127502 (25 bp)
GTCAAACAGGGTGGACTGCGTGCCT
LOC_Os01g55250
Target Sequence 
GAGGTACTTGGCACGGCAGCAGAAACGATATATGGCTGAGGAAGAAAGGCCATTGAAGACAACCGTACCACCAGCACGAG
CAGGAGCCATCCAGCTAGGTTACCATTCGCGTAGTAAAGGCGGCGCCAGCGGACTGTACGACCCGCAATCCAGCCTCCGC
GGACCACGGGGAATAAAAGAAGAGAGGGCAAAAGCTGTGTCAAACAGGGTGGACTGCGTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11611.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis