Browse Element(s) Details


OsAffx.11858.1.S1_at

Description tigr:9630.m00032
TID=OsAffx.11858.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=invertase inhibitor precursor (pollen allergen pla a 1). (london plane tree, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0130011/11Plant invertase/pectin methylesterase inhibitor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01260OsAffx.19542.3.S1_x_at6/112+139660..143882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01270Os.53051.1.S1_at11/112+146494..152568START domain-containing protein, putative, expressed
LOC_Os02g01270Os.53051.2.S1_x_at10/112+146494..152568START domain-containing protein, putative, expressed
LOC_Os02g01280Os.20421.1.S1_at11/112+158674..163732RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os02g01290Os.23805.2.A1_at11/112+163662..164372expressed protein
LOC_Os02g01300OsAffx.11858.1.S1_at11/112+165491..167012Plant invertase/pectin methylesterase inhibitor family protein, expressed
LOC_Os02g01310Os.5658.1.S1_at11/112+168442..169528pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g01320OsAffx.11859.1.S1_at11/112+171034..171569hypothetical protein
LOC_Os02g01326Os.23534.1.A1_at11/112+175818..179370Integral membrane protein DUF6 containing protein, expressed
LOC_Os02g01332Os.4982.1.S1_at11/112+180321..18344060S ribosomal protein L9, putative, expressed
LOC_Os02g01340Os.15243.2.S1_x_at11/112+183601..185325Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os02g01340Os.15243.1.S1_a_at11/112+183601..185325Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os02g01350Os.7515.1.S1_s_at11/112+187508..192121expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046910molecular_functionpectinesterase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11858.1.S1_at--744--9731Chr02:166124..166148 (25 bp)
TAATAATGGTCATTGCGTCGTCGCC
LOC_Os02g01300
OsAffx.11858.1.S1_at--572--10171Chr02:166072..166096 (25 bp)
TATAGTGGAGGAGACGTGCGGGCAA
LOC_Os02g01300
OsAffx.11858.1.S1_at--304--3991Chr02:166054..166078 (25 bp)
CGGGCAATGCAGCAGGAGCAACCCC
LOC_Os02g01300
OsAffx.11858.1.S1_at--1018--2571Chr02:166029..166053 (25 bp)
AACGTGAACTACACCCTGTGCGTGT
LOC_Os02g01300
OsAffx.11858.1.S1_at--550--8971Chr02:166025..166049 (25 bp)
TGAACTACACCCTGTGCGTGTCGTC
LOC_Os02g01300
OsAffx.11858.1.S1_at--43--1811Chr02:166017..166041 (25 bp)
ACCCTGTGCGTGTCGTCCCTGTCGG
LOC_Os02g01300
OsAffx.11858.1.S1_at--487--6151Chr02:165868..165892 (25 bp)
GAGGTCCTGCCTCGACTCGTGCCTG
LOC_Os02g01300
OsAffx.11858.1.S1_at--171--4471Chr02:165860..165884 (25 bp)
GCCTCGACTCGTGCCTGGAGGTGTT
LOC_Os02g01300
OsAffx.11858.1.S1_at--1001--4031Chr02:165797..165821 (25 bp)
CGATCGAGTCGTGGAGGTACGGCGA
LOC_Os02g01300
OsAffx.11858.1.S1_at--100--2771Chr02:165768..165792 (25 bp)
AAGACGGCGATGAGCGCCACCACCG
LOC_Os02g01300
OsAffx.11858.1.S1_at--936--4251Chr02:165738..165762 (25 bp)
CCGGTGACCTGCGAGGACGAGTTCA
LOC_Os02g01300
Target Sequence 
TAATAATGGTCATTGCGTCGTCGCCGGCGGCAGTGGCGGCGGCGGGCGAGGATATAGTGGAGGAGACGTGCGGGCAATGC
AGCAGGAGCAACCCCAACGTGAACTACACCCTGTGCGTGTCGTCCCTGTCGGGGTACCCAGGCGCCGACCTCCATGGCCT
CGCCCTCTTCTCCACCATGCCGCTCCGCTCCGCCCTGGCCACCATCGCCTCCGAGGCCAGGGTGCTCCGCGACAGGGCGC
CGCCGGGGTCGCCGCCGAGGTCCTGCCTCGACTCGTGCCTGGAGGTGTTCCGCGACGCCGCCTACAACCTCGGCAACGCC
GTGGCGGCGATCGAGTCGTGGAGGTACGGCGACGCCAAGACGGCGATGAGCGCCACCACCGACGCGCCGGTGACCTGCGA
GGACGAGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis