Browse Element(s) Details


OsAffx.11884.1.S1_at

Description tigr:9630.m00302
TID=OsAffx.11884.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box protein interaction domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0398011/11F-box protein interaction domain containing protein
LOC_Os02g0400011/11F-box protein interaction domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03960Os.21442.1.S1_x_at11/112+1695603..1697219Ocs-element binding factor 1, putative, expressed
LOC_Os02g03960Os.21442.1.S1_at11/112+1695603..1697219Ocs-element binding factor 1, putative, expressed
LOC_Os02g03970Os.7266.1.S1_at11/112+1708916..1716927Ipomoea nil leaf protein, putative, expressed
LOC_Os02g03980OsAffx.11884.1.S1_at11/112+1719673..1720857F-box protein interaction domain containing protein
LOC_Os02g03990OsAffx.2499.1.S1_at11/112+1723476..1727642transducin family protein, putative
LOC_Os02g04000OsAffx.11884.1.S1_at11/112+1731654..1732793F-box protein interaction domain containing protein
LOC_Os02g04000OsAffx.24088.2.S1_at1/112+1731654..1732793F-box protein interaction domain containing protein
LOC_Os02g04010Os.26853.1.A1_at11/112+1734001..1737472Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g04010Os.12108.1.S1_at10/112+1734001..1737472Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g04020Os.7324.1.S1_at11/112+1743661..1748216phosphatidylinositol transfer-like protein III, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11884.1.S1_at--1022--3932Chr02:1732286..1732310 (25 bp)
CGGCAAGCCACAGATATCGTCGTTC
LOC_Os02g04000
OsAffx.11884.1.S1_at--1026--4232Chr02:1732408..1732432 (25 bp)
CCGTGTGGACGATGACCGAGCTGCA
LOC_Os02g04000
OsAffx.11884.1.S1_at--1045--5812Chr02:1732421..1732445 (25 bp)
GACCGAGCTGCACCTCGACGTCTGG
LOC_Os02g04000
OsAffx.11884.1.S1_at--882--1992Chr02:1732511..1732535 (25 bp)
ACTCGCCTACTGGAGCAAGGGCAGC
LOC_Os02g04000
OsAffx.11884.1.S1_at--600--5832Chr02:1732595..1732619 (25 bp)
GACCTGGGCTTGGAAGTTGCTGTAC
LOC_Os02g04000
OsAffx.11884.1.S1_at--435--10492Chr02:1732604..1732628 (25 bp)
TTGGAAGTTGCTGTACGACGACACC
LOC_Os02g04000
OsAffx.11884.1.S1_at--379--10232Chr02:1732658..1732682 (25 bp)
TATTGTTCCGAGACACTGTGGACAT
LOC_Os02g04000
OsAffx.11884.1.S1_at--242--8812Chr02:1732661..1732685 (25 bp)
TGTTCCGAGACACTGTGGACATTTC
LOC_Os02g04000
OsAffx.11884.1.S1_at--800--5992Chr02:1732719..1732743 (25 bp)
GAGAGCCTCGTCAGGGTGGAATCTT
LOC_Os02g04000
OsAffx.11884.1.S1_at--1051--1672Chr02:1732722..1732746 (25 bp)
AGCCTCGTCAGGGTGGAATCTTGCA
LOC_Os02g04000
OsAffx.11884.1.S1_at--973--1052Chr02:1732731..1732755 (25 bp)
AGGGTGGAATCTTGCACGCCGGACC
LOC_Os02g04000
Target Sequence 
CGGCAAGCCACAGATATCGTCGTTCGACACGGTGTCGGAGGCGTTCCGCCTGCTGCCGCCGCCTCCGGTGAGCCTCGCCN
AGGACGAACTGGTCGNCATGATCGACATGCNCGGCACGCCGGCCGTGTGGACGATGACCGAGCTGCACCTCGACGTCTGG
GCCTTGGANGAGGANGAGAGGTGGGTGCGGCGGCTGCGGGTGGNGATGCCTCCGCCGCCCGCGCCACTCGCCTACTGGAG
CAAGGGCAGCNGGAAGAACGCCGTNGCNACGTTCGAGTCCGGCGNCGGCGGCGTGCAGATGGTGGTGGTGACCTGGGCTT
GGAAGTTGCTGTACGACGACACCANCAAGGACAGGAGGGTGGTGGGTCGCACNNNNNNNNTATTGTTCCGAGACACTGTG
GACATTTCNGGCACACCAATTGTTGGTTTCNTGCCTACCGGGAGAGCCTCGTCAGGGTGGAATCTTGCACGCCGGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis