Browse Element(s) Details


Os.7266.1.S1_at

Description gb:AK063912.1
DB_XREF= gi:32973930
TID=Os.7266.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7266 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023144A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-A08, full insert sequence.
FL= gb:AK063912.1 gb:AK073010.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0397011/11Ipomoea nil leaf protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03950Os.27262.3.S1_at11/112+1680213..1689438Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g03950Os.27262.1.S1_a_at10/112+1680213..1689438Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g03960Os.21442.1.S1_x_at11/112+1695603..1697219Ocs-element binding factor 1, putative, expressed
LOC_Os02g03960Os.21442.1.S1_at11/112+1695603..1697219Ocs-element binding factor 1, putative, expressed
LOC_Os02g03970Os.7266.1.S1_at11/112+1708916..1716927Ipomoea nil leaf protein, putative, expressed
LOC_Os02g03980OsAffx.11884.1.S1_at11/112+1719673..1720857F-box protein interaction domain containing protein
LOC_Os02g03990OsAffx.2499.1.S1_at11/112+1723476..1727642transducin family protein, putative
LOC_Os02g04000OsAffx.11884.1.S1_at11/112+1731654..1732793F-box protein interaction domain containing protein
LOC_Os02g04000OsAffx.24088.2.S1_at1/112+1731654..1732793F-box protein interaction domain containing protein
LOC_Os02g04010Os.26853.1.A1_at11/112+1734001..1737472Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g04010Os.12108.1.S1_at10/112+1734001..1737472Cyclin, N-terminal domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7266.1.S1_at--319--8871Chr02:1709491..1709515 (25 bp)
TGAGGCCTTTGGTGTGACCACTGGC
LOC_Os02g03970
Os.7266.1.S1_at--996--1972Chr04:35076897..35077146 (25 bp)
ACTCCCTGCATTGCAATTGCATTGC
NONE
Os.7266.1.S1_at--882--2951Chr02:1709421..1709445 (25 bp)
AATGGCCAAGACCTAGCTAGCCAGC
LOC_Os02g03970
Os.7266.1.S1_at--106--291Chr02:1709386..1709410 (25 bp)
ATAGTGCTTCCCATGTGACCACAAG
LOC_Os02g03970
Os.7266.1.S1_at--660--2331Chr02:1709305..1709329 (25 bp)
AAAGATCTGCCCTGTTTGATTTTGG
LOC_Os02g03970
Os.7266.1.S1_at--549--5051Chr02:1709246..1709270 (25 bp)
GCAGAATAGTTGTACTCCTCAGCCT
LOC_Os02g03970
Os.7266.1.S1_at--970--9251Chr02:1709231..1709255 (25 bp)
TCCTCAGCCTGCAACCAAGATATCA
LOC_Os02g03970
Os.7266.1.S1_at--516--7051Chr02:1709182..1709206 (25 bp)
GTAACAGCCACACATTTTTGCACCT
LOC_Os02g03970
Os.7266.1.S1_at--459--5091Chr02:1709163..1709187 (25 bp)
GCACCTGTTACAGCTCAAGTCATTA
LOC_Os02g03970
Os.7266.1.S1_at--1106--8291Chr02:1708971..1708995 (25 bp)
GGCTTATGATCAGTTCCTTTCACTA
LOC_Os02g03970
Os.7266.1.S1_at--1116--7591Chr02:1708937..1708961 (25 bp)
GGGCACTGCCATTTTATTACCTTAA
LOC_Os02g03970
Target Sequence 
TGAGGCCTTTGGTGTGACCACTGGCCACCACTCCCTGCATTGCAATTGCATTGCAGCCCCCACTTGGCTTAATGGCCAAG
ACCTAGCTAGCCAGCCTCTCTGCTCATAGTGCTTCCCATGTGACCACAAGGCTAGGGTTTGGTCACAGTGAAACAATCAC
TGCCCCANAGCCTCACCAACCAGGAAAAAGATCTGCCCTGTTTGATTTTGGGAGTGGAGTGAGGGGAGAGATTGAGATTG
GTAGGGCAGAATAGTTGTACTCCTCAGCCTGCAACCAAGATATCACAGGATAATATCTTAACCAGATAGGTAACAGCCAC
ACATTTTTGCACCTGTTACAGCTCAAGTCATTACTAAAACCAGCATTGTTGTAGAAGTTATGATTTGTGTTCTAGTTTTT
CTTTATTGGGGTATGCCTTTGATTACAGGTACAATGGTTATGGTGAAGATTGTCTTTTGATCTTGTCATCTAATTCATGG
TATGCAATTGCAAAACGGGTTGCATAGCTGAATATATGATGGCTTATGATCAGTTCCTTTCACTAACAGATATTGGGCAC
TGCCATTTTATTACCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis