Browse Element(s) Details


Os.27262.3.S1_at

Description gb:AK070078.1
DB_XREF= gi:32980102
TID=Os.27262.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27262 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045B03, full insert sequence.
FL= gb:AK070078.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0395011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03900Os.54147.1.S1_at11/112+1658576..1662644NRAMP family Mn2+/Fe2+ transporters containing protein, expressed
LOC_Os02g03910OsAffx.24088.2.S1_at11/112+1664217..1665802F-box domain containing protein
LOC_Os02g03920NANA2+1666678..1667007hypothetical protein
LOC_Os02g03930OsAffx.11882.1.S1_at11/112+1667744..1672318pentatricopeptide, putative, expressed
LOC_Os02g03940OsAffx.11883.1.S1_at11/112+1672931..1676493expressed protein
LOC_Os02g03940Os.15568.1.S1_at10/112+1672931..1676493expressed protein
LOC_Os02g03950Os.27262.3.S1_at11/112+1680213..1689438Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g03950Os.27262.1.S1_a_at10/112+1680213..1689438Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g03960Os.21442.1.S1_x_at11/112+1695603..1697219Ocs-element binding factor 1, putative, expressed
LOC_Os02g03960Os.21442.1.S1_at11/112+1695603..1697219Ocs-element binding factor 1, putative, expressed
LOC_Os02g03970Os.7266.1.S1_at11/112+1708916..1716927Ipomoea nil leaf protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27262.3.S1_at--386--10451Chr02:1684759..1684783 (25 bp)
TTAACCTAGGAGTGCTTATAGCTGA
LOC_Os02g03950
Os.27262.3.S1_at--162--7051Chr02:1684815..1684839 (25 bp)
GTAACTCAGTTAGATCTTCCACATT
LOC_Os02g03950
Os.27262.3.S1_at--309--10871Chr02:1684852..1684876 (25 bp)
TTGGATTCAGTCCTTGAGAGTTGAT
LOC_Os02g03950
Os.27262.3.S1_at--827--9831Chr02:1684876..1684900 (25 bp)
TAAACCATGCTTGATGTGGCTTCTG
LOC_Os02g03950
Os.27262.3.S1_at--1026--5491Chr02:1684903..1684927 (25 bp)
GAACAGATTCAGACACACCTCAAAA
LOC_Os02g03950
Os.27262.3.S1_at--328--9571Chr02:1684946..1684970 (25 bp)
TCATGGGAACAACACTTGGCTAATT
LOC_Os02g03950
Os.27262.3.S1_at--1006--3071Chr02:1684979..1685003 (25 bp)
AATACAAAGATTTCCCACCACAAGG
LOC_Os02g03950
Os.27262.3.S1_at--32--1071Chr02:1685001..1685025 (25 bp)
AGGGACGTACCAACTTGATTTGAAT
LOC_Os02g03950
Os.27262.3.S1_at--658--3571Chr02:1685085..1685109 (25 bp)
CATAGCTTCACCTTCCTATTGAGAT
LOC_Os02g03950
Os.27262.3.S1_at--1044--8811Chr02:1685156..1685180 (25 bp)
TGTTGTGCTGGCATAAATCAGGCTA
LOC_Os02g03950
Os.27262.3.S1_at--600--211Chr02:1685204..1685228 (25 bp)
ATTTGCAATGCTATTACTTGGCTTA
LOC_Os02g03950
Target Sequence 
TTAACCTAGGAGTGCTTATAGCTGACTTATATACTAGTGATCCAAGATGAATCATTGTAACTCAGTTAGATCTTCCACAT
TTTCTGAAAACAGTTGGATTCAGTCCTTGAGAGTTGATAAACCATGCTTGATGTGGCTTCTGATGAACAGATTCAGACAC
ACCTCAAAATCTTAGTTTTTTTTTTTGTTTCATGGGAACAACACTTGGCTAATTCAAGTTACAATACAAAGATTTCCCAC
CACAAGGGACGTACCAACTTGATTTGAATATGCCATGAGCCATGAAGAGTGCATACATTTTGATGGAGAAGCTGTAGATA
TATATATTCATAGCTTCACCTTCCTATTGAGATCCAAAACTAAAGTAACTGCATTGCAATAACCAAATCCATCAATTGTT
GTTGTGCTGGCATAAATCAGGCTAATTTCTGATTAATCTTTTGTACTATTTGCAATGCTATTACTTGGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27262.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis