Browse Element(s) Details


Os.15568.1.S1_at

Description gb:BM038713
DB_XREF= gi:16754334
DB_XREF=V007G10
CLONE=V007G10
TID=Os.15568.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.15568 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0394010/11expressed protein
LOC_Os11g441701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03870OsAffx.24089.1.S1_x_at11/112+1643997..1648808Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os02g03880NANA2+1650809..1651178Mitochondrial import receptor subunit TOM22 homolog, putative, expressed
LOC_Os02g03890Os.15310.1.S1_at10/112+1652080..1655123Nuclear transport factor 2 domain containing protein, expressed
LOC_Os02g03900Os.54147.1.S1_at11/112+1658576..1662644NRAMP family Mn2+/Fe2+ transporters containing protein, expressed
LOC_Os02g03910OsAffx.24088.2.S1_at11/112+1664217..1665802F-box domain containing protein
LOC_Os02g03920NANA2+1666678..1667007hypothetical protein
LOC_Os02g03930OsAffx.11882.1.S1_at11/112+1667744..1672318pentatricopeptide, putative, expressed
LOC_Os02g03940OsAffx.11883.1.S1_at11/112+1672931..1676493expressed protein
LOC_Os02g03940Os.15568.1.S1_at10/112+1672931..1676493expressed protein
LOC_Os02g03950Os.27262.3.S1_at11/112+1680213..1689438Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g03950Os.27262.1.S1_a_at10/112+1680213..1689438Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g03960Os.21442.1.S1_x_at11/112+1695603..1697219Ocs-element binding factor 1, putative, expressed
LOC_Os02g03960Os.21442.1.S1_at11/112+1695603..1697219Ocs-element binding factor 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15568.1.S1_at--593--7531NONE
GTGGCACGATGCGTTCTCTTTTTCT
NONE
Os.15568.1.S1_at--177--3912Chr11:26176684..26176712 (23 bp)
CTGGAATTAGTTTCTTGCTTCTTCT
LOC_Os11g44170
Os.15568.1.S1_at--392--8831Chr02:1673106..1673130 (25 bp)
TGATCTTTACCTCAGTCAGCGTTGT
LOC_Os02g03940
Os.15568.1.S1_at--340--3431Chr02:1673094..1673118 (25 bp)
CAGTCAGCGTTGTGTGTTAGGTTAT
LOC_Os02g03940
Os.15568.1.S1_at--358--10591Chr02:1673061..1673085 (25 bp)
TTCTCTCTTTATCTATAGCCTGGCA
LOC_Os02g03940
Os.15568.1.S1_at--287--10191Chr02:1673048..1673072 (25 bp)
TATAGCCTGGCAATGATCTCATGTT
LOC_Os02g03940
Os.15568.1.S1_at--351--9531Chr02:1673032..1673056 (25 bp)
TCTCATGTTGAGTAAATCTGCAGTG
LOC_Os02g03940
Os.15568.1.S1_at--1136--3051Chr02:1673018..1673042 (25 bp)
AATCTGCAGTGGTTTGTGCTGCACT
LOC_Os02g03940
Os.15568.1.S1_at--628--7311Chr02:1673003..1673027 (25 bp)
GTGCTGCACTGCTTCATGTAACGTG
LOC_Os02g03940
Os.15568.1.S1_at--580--7331Chr02:1672981..1673005 (25 bp)
GTGAAATACTCTGTAACGTCTGCTG
LOC_Os02g03940
Os.15568.1.S1_at--1045--8731Chr02:1672970..1672994 (25 bp)
TGTAACGTCTGCTGTTTCCAACTTA
LOC_Os02g03940
Target Sequence 
GTGGCACGATGCGTTCTCTTTTTCTTCAGATGGACAGAACACTTCAGGAGGAGGGGATGCATCTGGAGAATCGTTGAAGG
ANGTGCAAGAAATGCAAATGAATTGTGAGAAAGGGCTCAGATACATGGCTTGCGAGGCTCCATTAGTAGGACCANTGGCT
GAATTATGGAAACTGAAGAACTCGGAGACTCCTGAGAGCGAGTGGGCAGTGCAAGCTGCTGCCGCTTCCATCTANCTCGA
CTTGCAACCTGGTCATGAGAACCGAGAATGTTTCTTGCTTCTGATCTCTTCTCACANCTGGAATTAGTTTCTTGCTTCTT
CTTTTTTCTTTTCTTTTTCATTTTACTGATCTTTACCTCAGTCAGCGTTGTGTGTTAGGTTATGTTTTTTTTTCTCTCTT
TATCTATAGCCTGGCAATGATCTCATGTTGAGTAAATCTGCAGTGGTTTGTGCTGCACTGCTTCATGTAACGTGAAATAC
TCTGTAACGTCTGCTGTTTCCAACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis