Browse Element(s) Details


OsAffx.11882.1.S1_at

Description tigr:9630.m00297
TID=OsAffx.11882.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0393011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03870OsAffx.24089.1.S1_x_at11/112+1643997..1648808Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os02g03880NANA2+1650809..1651178Mitochondrial import receptor subunit TOM22 homolog, putative, expressed
LOC_Os02g03890Os.15310.1.S1_at10/112+1652080..1655123Nuclear transport factor 2 domain containing protein, expressed
LOC_Os02g03900Os.54147.1.S1_at11/112+1658576..1662644NRAMP family Mn2+/Fe2+ transporters containing protein, expressed
LOC_Os02g03910OsAffx.24088.2.S1_at11/112+1664217..1665802F-box domain containing protein
LOC_Os02g03920NANA2+1666678..1667007hypothetical protein
LOC_Os02g03930OsAffx.11882.1.S1_at11/112+1667744..1672318pentatricopeptide, putative, expressed
LOC_Os02g03940OsAffx.11883.1.S1_at11/112+1672931..1676493expressed protein
LOC_Os02g03940Os.15568.1.S1_at10/112+1672931..1676493expressed protein
LOC_Os02g03950Os.27262.3.S1_at11/112+1680213..1689438Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g03950Os.27262.1.S1_a_at10/112+1680213..1689438Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g03960Os.21442.1.S1_x_at11/112+1695603..1697219Ocs-element binding factor 1, putative, expressed
LOC_Os02g03960Os.21442.1.S1_at11/112+1695603..1697219Ocs-element binding factor 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11882.1.S1_at--1129--6071Chr02:1670256..1670280 (25 bp)
GAGTATTTGATGCTTCTCTGAGTAC
LOC_Os02g03930
OsAffx.11882.1.S1_at--883--771Chr02:1670200..1670224 (25 bp)
ATGTGCACCCAGTTATCTACTTATG
LOC_Os02g03930
OsAffx.11882.1.S1_at--430--7971Chr02:1670127..1670151 (25 bp)
GGATCTCTATCCATAGATTCCCATA
LOC_Os02g03930
OsAffx.11882.1.S1_at--1045--6431Chr02:1670062..1670086 (25 bp)
GATCATGGACATAGGTTACTCAAGC
LOC_Os02g03930
OsAffx.11882.1.S1_at--832--6511Chr02:1670022..1670046 (25 bp)
GATATTCATTTGATCCAGCAGCATT
LOC_Os02g03930
OsAffx.11882.1.S1_at--967--6351Chr02:1670011..1670035 (25 bp)
GATCCAGCAGCATTCATGCCAGTGA
LOC_Os02g03930
OsAffx.11882.1.S1_at--508--5151Chr02:1669958..1669982 (25 bp)
GCAACATGTTGATATGCTCTCACAA
LOC_Os02g03930
OsAffx.11882.1.S1_at--97--3431Chr02:1669917..1669941 (25 bp)
CAGAGCGTGATAATGGTCTTGCAGC
LOC_Os02g03930
OsAffx.11882.1.S1_at--415--9011Chr02:1669898..1669922 (25 bp)
TGCAGCTCCTTCTGGCGAATTTAAG
LOC_Os02g03930
OsAffx.11882.1.S1_at--90--7411Chr02:1669833..1669857 (25 bp)
GTGATTGGCATGCTCTTTTGCACAG
LOC_Os02g03930
OsAffx.11882.1.S1_at--1072--3451Chr02:1669560..1669584 (25 bp)
CAGTGCTCGCACAGTCATGAAAATC
LOC_Os02g03930
Target Sequence 
GAGTATTTGATGCTTCTCTGAGTACATGTGGTCAGAAGGAAGTGCTCTATAGTTTAATGTGCACCCAGTTATCTACTTAT
GGTAGATGGTTGGAAGCCATGAATATTCTAGAAACAGTGCTTGAATTAAGGATCTCTATCCATAGATTCCCATATAAGCA
GATTATTGAGGGACTCTGCAAAGTTGATGAGGTGGATCATGGACATAGGTTACTCAAGCTGTTAATGGTTAAAGGATATT
CATTTGATCCAGCAGCATTCATGCCAGTGATTGATGCATTGAGTGAAAGGGGAAAGAAGCAACATGTTGATATGCTCTCA
CAAAAAATGATGGAAATGGCAGAGCGTGATAATGGTCTTGCAGCTCCTTCTGGCGAATTTAAGCCTAGAAGTCAGAAGCA
TGGACAGGACAAGCATGCTGAAAGTGATTGGCATGCTCTTTTGCACAGAGATGACAGTGCTCGCACAGTCATGAAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis