Browse Element(s) Details


Os.21442.1.S1_at

Description gb:AK070887.1
DB_XREF= gi:32980910
TID=Os.21442.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21442 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064O22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064O22, full insert sequence.
FL= gb:AK070887.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0396011/11Ocs-element binding factor 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03930OsAffx.11882.1.S1_at11/112+1667744..1672318pentatricopeptide, putative, expressed
LOC_Os02g03940OsAffx.11883.1.S1_at11/112+1672931..1676493expressed protein
LOC_Os02g03940Os.15568.1.S1_at10/112+1672931..1676493expressed protein
LOC_Os02g03950Os.27262.3.S1_at11/112+1680213..1689438Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g03950Os.27262.1.S1_a_at10/112+1680213..1689438Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g03960Os.21442.1.S1_x_at11/112+1695603..1697219Ocs-element binding factor 1, putative, expressed
LOC_Os02g03960Os.21442.1.S1_at11/112+1695603..1697219Ocs-element binding factor 1, putative, expressed
LOC_Os02g03970Os.7266.1.S1_at11/112+1708916..1716927Ipomoea nil leaf protein, putative, expressed
LOC_Os02g03980OsAffx.11884.1.S1_at11/112+1719673..1720857F-box protein interaction domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21442.1.S1_at--154--1611Chr02:1695763..1695787 (25 bp)
AGCTGCTAGGGCTAATTAATGGCCT
LOC_Os02g03960
Os.21442.1.S1_at--288--4871Chr02:1695759..1695783 (25 bp)
GCTAGGGCTAATTAATGGCCTAATT
LOC_Os02g03960
Os.21442.1.S1_at--160--9771Chr02:1695747..1695771 (25 bp)
TAATGGCCTAATTATCTTGTGTAAT
LOC_Os02g03960
Os.21442.1.S1_at--12--8431Chr02:1695743..1695767 (25 bp)
GGCCTAATTATCTTGTGTAATTGGT
LOC_Os02g03960
Os.21442.1.S1_at--72--6251Chr02:1695709..1695733 (25 bp)
GATGGTTAAGTTAAGCCTTCTGCAT
LOC_Os02g03960
Os.21442.1.S1_at--62--6771Chr02:1695705..1695729 (25 bp)
GTTAAGTTAAGCCTTCTGCATGCAT
LOC_Os02g03960
Os.21442.1.S1_at--332--9791Chr02:1695703..1695727 (25 bp)
TAAGTTAAGCCTTCTGCATGCATCA
LOC_Os02g03960
Os.21442.1.S1_at--686--1211Chr02:1695701..1695725 (25 bp)
AGTTAAGCCTTCTGCATGCATCATC
LOC_Os02g03960
Os.21442.1.S1_at--679--9591Chr02:1695675..1695699 (25 bp)
TCATCATGTACTCCAACTATGTAAG
LOC_Os02g03960
Os.21442.1.S1_at--786--6991Chr02:1695668..1695692 (25 bp)
GTACTCCAACTATGTAAGGATTAAT
LOC_Os02g03960
Os.21442.1.S1_at--431--7931Chr02:1695651..1695675 (25 bp)
GGATTAATGAGGCAGTAAGCTTTCT
LOC_Os02g03960
Target Sequence 
AGCTGCTAGGGCTAATTAATGGCCTAATTATCTTGTGTAATTGGTAAATCAAGTGATGGTTAAGTTAAGCCTTCTGCATG
CATCATCATCATCATGTACTCCAACTATGTAAGGATTAATGAGGCAGTAAGCTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis