Browse Element(s) Details


OsAffx.11883.1.S1_at

Description tigr:9630.m00298
TID=OsAffx.11883.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0394011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03870OsAffx.24089.1.S1_x_at11/112+1643997..1648808Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os02g03880NANA2+1650809..1651178Mitochondrial import receptor subunit TOM22 homolog, putative, expressed
LOC_Os02g03890Os.15310.1.S1_at10/112+1652080..1655123Nuclear transport factor 2 domain containing protein, expressed
LOC_Os02g03900Os.54147.1.S1_at11/112+1658576..1662644NRAMP family Mn2+/Fe2+ transporters containing protein, expressed
LOC_Os02g03910OsAffx.24088.2.S1_at11/112+1664217..1665802F-box domain containing protein
LOC_Os02g03920NANA2+1666678..1667007hypothetical protein
LOC_Os02g03930OsAffx.11882.1.S1_at11/112+1667744..1672318pentatricopeptide, putative, expressed
LOC_Os02g03940OsAffx.11883.1.S1_at11/112+1672931..1676493expressed protein
LOC_Os02g03940Os.15568.1.S1_at10/112+1672931..1676493expressed protein
LOC_Os02g03950Os.27262.3.S1_at11/112+1680213..1689438Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g03950Os.27262.1.S1_a_at10/112+1680213..1689438Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g03960Os.21442.1.S1_x_at11/112+1695603..1697219Ocs-element binding factor 1, putative, expressed
LOC_Os02g03960Os.21442.1.S1_at11/112+1695603..1697219Ocs-element binding factor 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11883.1.S1_at--324--9611Chr02:1674381..1674405 (25 bp)
TCATCAGCAGTCACTATGGCTTCAG
LOC_Os02g03940
OsAffx.11883.1.S1_at--910--10091Chr02:1674367..1674391 (25 bp)
TATGGCTTCAGACAGGACCTGCAGT
LOC_Os02g03940
OsAffx.11883.1.S1_at--825--2351Chr02:1674178..1674200 (23 bp)
AAAGCGGCCAATGTTGCTTCTCAGT
LOC_Os02g03940
OsAffx.11883.1.S1_at--372--4911Chr02:1674163..1674187 (25 bp)
GCTTCTCAGTGGTTGGAGCTACTAC
LOC_Os02g03940
OsAffx.11883.1.S1_at--432--1571Chr02:1674147..1674171 (25 bp)
AGCTACTACAGCAGGACATCAGAGG
LOC_Os02g03940
OsAffx.11883.1.S1_at--1017--1331Chr02:1674047..1674151 (25 bp)
AGAGGGCGCCTTGCTGCTTTGAAGC
LOC_Os02g03940
OsAffx.11883.1.S1_at--1055--3471Chr02:1674006..1674030 (25 bp)
CAGGAATGCCCTTCAGACTGAACTG
LOC_Os02g03940
OsAffx.11883.1.S1_at--58--8991Chr02:1673988..1674012 (25 bp)
TGAACTGCCCTACCTAATATCAACA
LOC_Os02g03940
OsAffx.11883.1.S1_at--593--2771Chr02:1673947..1673971 (25 bp)
AAGAGAACGAACCATCCGTTGTACA
LOC_Os02g03940
OsAffx.11883.1.S1_at--110--7031Chr02:1673927..1673951 (25 bp)
GTACATTCTTCTGATGGTGGATCTA
LOC_Os02g03940
OsAffx.11883.1.S1_at--544--1871Chr02:1673871..1673895 (25 bp)
ACGATGGCGGTCTCTTTTTCTTCAG
LOC_Os02g03940
Target Sequence 
TCATCAGCAGTCACTATGGCTTCAGACAGGACCTGCAGTACATCAGCCGATGATTTTGCATCTAATCATGATTACATGAC
TGTGTTATCAGTAAAAGCGGCCAATGTTGCTTCTCAGTGGTTGGAGCTACTACAGCAGGACATCAGAGGGCGCCTTGCTG
CTTTGAAGCGCAGCAAGAAGAGAGTCAGGAATGCCCTTCAGACTGAACTGCCCTACCTAATATCAACAGAATTTTCATAT
AACCAAGAGAACGAACCATCCGTTGTACATTCTTCTGATGGTGGATCTACTGGAAAAACAGTTCCAGAAGCGCATGTGGC
ACGATGGCGGTCTCTTTTTCTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis