Browse Element(s) Details


OsAffx.11941.1.S1_x_at

Description tigr:9630.m00798
TID=OsAffx.11941.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT005987 At5g67430, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0840011/11acetyltransferase, GNAT family protein, expressed
LOC_Os06g441002/11acetyltransferase, GNAT family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08370Os.18975.1.S1_at11/112+4454853..4457731Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g08380Os.16502.1.S1_at11/112+4460297..4463658expressed protein
LOC_Os02g08390OsAffx.25936.1.S1_s_at8/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.7.S1_s_at7/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.2.S1_x_at4/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.1.S1_at2/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.5.S1_x_at1/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08400OsAffx.11941.1.S1_x_at11/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.11941.1.S1_at11/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.16049.1.S1_at1/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.16049.1.S1_x_at1/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.15919.1.S1_x_at1/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08410Os.54001.1.S1_at11/112+4486528..4489406chorismate mutase family protein, expressed
LOC_Os02g08420Os.12948.1.S1_at10/112+4497112..4500122NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009640biological_processphotomorphogenesis
GO:0009723biological_processresponse to ethylene stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11941.1.S1_x_at--160--4171Chr02:4482977..4483001 (25 bp)
CGCCGTCGTCGTTTGCGGTGCTCAG
LOC_Os02g08400
OsAffx.11941.1.S1_x_at--881--4011Chr02:4482983..4483007 (25 bp)
CGTCGTTTGCGGTGCTCAGCGTGTA
LOC_Os02g08400
OsAffx.11941.1.S1_x_at--958--10271Chr02:4482988..4483012 (25 bp)
TTTGCGGTGCTCAGCGTGTACGACG
LOC_Os02g08400
OsAffx.11941.1.S1_x_at--868--3971Chr02:4482992..4483016 (25 bp)
CGGTGCTCAGCGTGTACGACGCCAC
LOC_Os02g08400
OsAffx.11941.1.S1_x_at--1134--2571Chr02:4483228..4483252 (25 bp)
AACGTGGCGCGCAACAACCCGGCGT
LOC_Os02g08400
OsAffx.11941.1.S1_x_at--919--8471Chr02:4483312..4483336 (25 bp)
TGGCGACGCTTCTCATGCGACGAGG
LOC_Os02g08400
OsAffx.11941.1.S1_x_at--1100--5791Chr02:4483316..4483340 (25 bp)
GACGCTTCTCATGCGACGAGGACGT
LOC_Os02g08400
OsAffx.11941.1.S1_x_at--985--5772Chr02:4483330..4483354 (25 bp)
GACGAGGACGTCTGGTGCATCAAGA
LOC_Os02g08400
OsAffx.11941.1.S1_x_at--293--6192Chr02:4483333..4483357 (25 bp)
GAGGACGTCTGGTGCATCAAGAAAA
LOC_Os02g08400
OsAffx.11941.1.S1_x_at--224--371Chr02:4483348..4483372 (25 bp)
ATCAAGAAAATCACGTCCGTCGCCG
LOC_Os02g08400
OsAffx.11941.1.S1_x_at--42--1431Chr02:4483352..4483376 (25 bp)
AGAAAATCACGTCCGTCGCCGCCAA
LOC_Os02g08400
Target Sequence 
CGCCGTCGTCGTTTGCGGTGCTCAGCGTGTACGACGCCACGCGCTCCCTCAGCTTCCGCGTCGGCGGCGCGCCGCCGCTG
CTCCGCGCGTCGCTCGCCGCGGCGCGCGCGCTCGACCGCCGCGCGCCGTGGCTGCGCGTCCCTTCCGTCCCCGACGTCTT
CCGCCCCTTCGGCGCCTACCTCCTTTACGGCCTCCACATGTCCGGCCCGGCGGGCGCCGCGCTCCTCCGCACGCTCTGCC
GCCACGCCCACAACGTGGCGCGCAACAACCCGGCGTGCGCCGTCGTCGCCGCCGACGTCGCGCCCGACGACCCGGCCGCC
GCCGCCGTGCCGCACTGGCGACGCTTCTCATGCGACGAGGACGTCTGGTGCATCAAGAAAATCACGTCCGTCGCCGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11941.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis