Browse Element(s) Details


OsAffx.1197.1.S1_x_at

Description gb:NM_189143.1
DB_XREF= gi:34905369
GEN=OJ1126_G08.15
TID=OsAffx.1197.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1126_G08.15 (OJ1126_G08.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g075304/11hypothetical protein
LOC_Os03g457004/11retrotransposon protein, putative, unclassified
LOC_Os12g260003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g142002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g225201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g282441/11retrotransposon protein, putative, unclassified
LOC_Os07g183901/11retrotransposon protein, putative, unclassified
LOC_Os12g181901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g302201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g213401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g347801/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g246401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g222491/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07490Os.45173.1.S1_x_at6/114+3967875..3972084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07490Os.17297.1.S1_at1/114+3967875..3972084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07500NANA4+3980329..3980565hypothetical protein
LOC_Os04g07510OsAffx.22385.1.S1_x_at3/114+3984445..3988653retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07520OsAffx.1198.1.S1_at3/114+3989191..3990378hypothetical protein
LOC_Os04g07530OsAffx.1197.1.S1_x_at4/114+3992356..3995226hypothetical protein
LOC_Os04g07530OsAffx.493.1.S1_x_at1/114+3992356..3995226hypothetical protein
LOC_Os04g07530OsAffx.9790.1.S1_x_at1/114+3992356..3995226hypothetical protein
LOC_Os04g07540NANA4+3999147..3999692hypothetical protein
LOC_Os04g07550OsAffx.19950.1.S1_at1/114+4006121..4007502Zinc knuckle family protein
LOC_Os04g07560NANA4+4007884..4008300hypothetical protein
LOC_Os04g07570Os.45173.1.S1_x_at2/114+4010900..4012827retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07580NANA4+4014850..4021149retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1197.1.S1_x_at--993--19125Chr12:26710219..26710292 (25 bp)
ACGGAGGACACCAACACATCAACGG
NONE
OsAffx.1197.1.S1_x_at--306--9520Chr12:26710223..26710296 (25 bp)
AGGACACCAACACATCAACGGACGG
NONE
OsAffx.1197.1.S1_x_at--1080--81318Chr12:26710224..26710297 (25 bp)
GGACACCAACACATCAACGGACGGC
NONE
OsAffx.1197.1.S1_x_at--871--21521Chr12:26710226..26710299 (25 bp)
ACACCAACACATCAACGGACGGCGA
NONE
OsAffx.1197.1.S1_x_at--112--24775Chr12:26710231..26710304 (25 bp)
AACACATCAACGGACGGCGACGGCG
NONE
OsAffx.1197.1.S1_x_at--755--21759Chr12:26710285..26710305 (21 bp)
ACACATCAACGGACGGCGACGGCGT
NONE
OsAffx.1197.1.S1_x_at--1114--14125Chr11:20354259..20354278 (20 bp)
AGAAACGGCGGCAACCTTCGGCTTG
NONE
OsAffx.1197.1.S1_x_at--82--81971Chr12:10258588..10258911 (25 bp)
GGCAACCTTCGGCTTGACGACGACG
NONE
OsAffx.1197.1.S1_x_at--1147--7775Chr11:15996655..15996675 (21 bp)
GGTGCTCCGGCGACCTACGGCGATG
NONE
OsAffx.1197.1.S1_x_at--705--4912Chr11:21439470..21439489 (20 bp)
ATCGGCGACGGCTTGGTGACCACGA
NONE
OsAffx.1197.1.S1_x_at--872--4937Chr09:8392196..8392216 (21 bp)
GCTTGGTGACCACGACGGCGACCTC
NONE
Target Sequence 
ACGGAGGACACCAACACATCAACGGACGGCGACGGCGTCGAGGAAGAAACGGCGGCAACCTTCGGCTTGACGACGACGGC
GGTGCTCCGGCGACCTACGGCGATGGCGGAGGGGTGGACGAGATCGGCGACGGCTTGGTGACCACGACGGCGACCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1197.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis