Browse Element(s) Details


OsAffx.11999.1.S1_at

Description tigr:9630.m01109
TID=OsAffx.11999.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g122307/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12220NANA2+6366274..6369534retrotransposon protein, putative, unclassified
LOC_Os02g12230OsAffx.11999.1.S1_at7/112+6374629..6375930hypothetical protein
LOC_Os02g12240OsAffx.2692.1.S1_at2/112+6376517..6377029hypothetical protein
LOC_Os02g12250OsAffx.24209.1.S1_at10/112+6382076..6382927expressed protein
LOC_Os02g12260OsAffx.2583.1.S1_at10/112+6385765..6387143hypothetical protein
LOC_Os02g12270NANA2+6387518..6387859hypothetical protein
LOC_Os02g12280OsAffx.24211.1.S1_at11/112+6389914..6391121hypothetical protein
LOC_Os02g12290OsAffx.2584.1.S1_at11/112+6397342..6399236Nuclear ribonuclease Z, putative
LOC_Os02g12300Os.53956.1.S1_at11/112+6399412..6402186Pectate lyase precursor, putative, expressed
LOC_Os02g12300OsAffx.18481.1.S1_x_at1/112+6399412..6402186Pectate lyase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11999.1.S1_at--294--9771Chr02:6374660..6374684 (25 bp)
TAATCCTAGTGCTGTCCCTCTGGCT
LOC_Os02g12230
OsAffx.11999.1.S1_at--763--3911Chr02:6374718..6374742 (25 bp)
CGGCGCTTCATCAGCCGGCAACGAG
LOC_Os02g12230
OsAffx.11999.1.S1_at--1018--3251NONE
CAACGAGCTTTTGCCATTGAGCGGT
NONE
OsAffx.11999.1.S1_at--1146--5911NONE
GAGCTTTTGCCATTGAGCGGTGGCA
NONE
OsAffx.11999.1.S1_at--146--10371NONE
TTTTGCCATTGAGCGGTGGCAGCTC
NONE
OsAffx.11999.1.S1_at--85--4331NONE
CCATTGAGCGGTGGCAGCTCCAGGC
NONE
OsAffx.11999.1.S1_at--559--6011Chr02:6375400..6375424 (25 bp)
GAGAGGAAAGACGGCTATGGTTTAA
LOC_Os02g12230
OsAffx.11999.1.S1_at--554--4851Chr02:6375413..6375437 (25 bp)
GCTATGGTTTAAGTATCGCGAAATC
LOC_Os02g12230
OsAffx.11999.1.S1_at--1112--10491Chr02:6375421..6375445 (25 bp)
TTAAGTATCGCGAAATCAGCACGGC
LOC_Os02g12230
OsAffx.11999.1.S1_at--974--9331Chr02:6375428..6375452 (25 bp)
TCGCGAAATCAGCACGGCGATCTCT
LOC_Os02g12230
OsAffx.11999.1.S1_at--1156--4591Chr02:6375430..6375454 (25 bp)
GCGAAATCAGCACGGCGATCTCTCC
LOC_Os02g12230
Target Sequence 
TAATCCTAGTGCTGTCCCTCTGGCTGCTGCCGTCGCTTCTGCCCGGTTCTCTCGCCGCCGGCGCTTCATCAGCCGGCAAC
GAGCTTTTGCCATTGAGCGGTGGCAGCTCCAGGCGGATGGCGATGGTGAGAAGCAGGGAGAGGAAAGACGGCTATGGTTT
AAGTATCGCGAAATCAGCACGGCGATCTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis