Browse Element(s) Details


OsAffx.2584.1.S1_at

Description tigr:9630.m01115
TID=OsAffx.2584.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNase Z
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1229011/11Nuclear ribonuclease Z, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12230OsAffx.11999.1.S1_at7/112+6374629..6375930hypothetical protein
LOC_Os02g12240OsAffx.2692.1.S1_at2/112+6376517..6377029hypothetical protein
LOC_Os02g12250OsAffx.24209.1.S1_at10/112+6382076..6382927expressed protein
LOC_Os02g12260OsAffx.2583.1.S1_at10/112+6385765..6387143hypothetical protein
LOC_Os02g12270NANA2+6387518..6387859hypothetical protein
LOC_Os02g12280OsAffx.24211.1.S1_at11/112+6389914..6391121hypothetical protein
LOC_Os02g12290OsAffx.2584.1.S1_at11/112+6397342..6399236Nuclear ribonuclease Z, putative
LOC_Os02g12300Os.53956.1.S1_at11/112+6399412..6402186Pectate lyase precursor, putative, expressed
LOC_Os02g12300OsAffx.18481.1.S1_x_at1/112+6399412..6402186Pectate lyase precursor, putative, expressed
LOC_Os02g12310Os.39041.1.S1_s_at11/112+6404019..6405861No apical meristem protein, expressed
LOC_Os02g12310Os.10944.1.S1_at10/112+6404019..6405861No apical meristem protein, expressed
LOC_Os02g12320NANA2+6406853..6415392retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g12330OsAffx.12000.1.S1_at11/112+6418378..6419378hypothetical protein
LOC_Os02g12330OsAffx.12000.1.S1_x_at10/112+6418378..6419378hypothetical protein
LOC_Os02g12340OsAffx.12003.2.S1_at11/112+6422491..6424004hypothetical protein
LOC_Os02g12340OsAffx.12003.2.S1_s_at11/112+6422491..6424004hypothetical protein
LOC_Os02g12340OsAffx.12003.1.S1_at9/112+6422491..6424004hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008033biological_processtRNA processing
GO:0005634cellular_componentnucleus
GO:0009507cellular_componentchloroplast
GO:0042781molecular_function3'-tRNA processing endoribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2584.1.S1_at--353--1511Chr02:6397757..6397781 (25 bp)
AGCACGAGCTCAGGAGGGACCTCAA
LOC_Os02g12290
OsAffx.2584.1.S1_at--254--9011Chr02:6397784..6397808 (25 bp)
TGAAGGCCTTCAAGACCTACCACGC
LOC_Os02g12290
OsAffx.2584.1.S1_at--1098--1191Chr02:6397967..6397991 (25 bp)
AGTATCTTGGCCTCCCTGGGAGCGA
LOC_Os02g12290
OsAffx.2584.1.S1_at--920--1831Chr02:6398135..6398159 (25 bp)
ACGAATACATTGACGGTGCCTGAGA
LOC_Os02g12290
OsAffx.2584.1.S1_at--1145--7251Chr02:6398150..6398174 (25 bp)
GTGCCTGAGATTGCTTTTACCGGAG
LOC_Os02g12290
OsAffx.2584.1.S1_at--348--8271Chr02:6398182..6398206 (25 bp)
GGCAGATTTCATTCTTGATCCTGAT
LOC_Os02g12290
OsAffx.2584.1.S1_at--820--7011Chr02:6398624..6398648 (25 bp)
GTACTTTTGTTGATGACTCTGTTAC
LOC_Os02g12290
OsAffx.2584.1.S1_at--191--8651Chr02:6398670..6398691 (22 bp)
TGGGCACACCCATCTGTTTGAGATA
LOC_Os02g12290
OsAffx.2584.1.S1_at--852--1551Chr02:6398823..6398847 (25 bp)
AGCTATTCTGCTAATCCACTTTTCT
LOC_Os02g12290
OsAffx.2584.1.S1_at--1001--9731Chr02:6398834..6398858 (25 bp)
TAATCCACTTTTCTGCTCGTTATAC
LOC_Os02g12290
OsAffx.2584.1.S1_at--1071--3171Chr02:6399175..6399199 (25 bp)
CAATCAATAAGTTGCCACCCTCTTT
LOC_Os02g12290
Target Sequence 
AGCACGAGCTCAGGAGGGACCTCAAGGTGAAGGCCTTCAAGACCTACCACGCCATTCCCAGCCAGGGGTATGTGATATAC
ACGGTGAAGCAAAAGCTCAAGCCAGAGTATCTTGGCCTCCCTGGGAGCGAGATCAAGCAGCTGAAGCTGTCAGGTGTGGA
GATTACGAATACATTGACGGTGCCTGAGATTGCTTTTACCGGAGATACGATGGCAGATTTCATTCTTGATCCTGATAATG
CGGATGTTTTGAAGGCGAAAATTCTTGTAGTGGAGAGTACTTTTGTTGATGACTCTGTTACAATTGAGCATGCAAGAGAA
TATGGGCACACCCATCTGTTTGAGATACTGAATCAGTGTGACAAACTTGAAAACAAAGCTATTCTGCTAATCCACTTTTC
TGCTCGTTATACCGCAGAGGAAATTGATATAGCAATCAATAAGTTGCCACCCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis