Browse Element(s) Details


OsAffx.12000.1.S1_at

Description tigr:9630.m01119
TID=OsAffx.12000.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1233011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12290OsAffx.2584.1.S1_at11/112+6397342..6399236Nuclear ribonuclease Z, putative
LOC_Os02g12300Os.53956.1.S1_at11/112+6399412..6402186Pectate lyase precursor, putative, expressed
LOC_Os02g12300OsAffx.18481.1.S1_x_at1/112+6399412..6402186Pectate lyase precursor, putative, expressed
LOC_Os02g12310Os.39041.1.S1_s_at11/112+6404019..6405861No apical meristem protein, expressed
LOC_Os02g12310Os.10944.1.S1_at10/112+6404019..6405861No apical meristem protein, expressed
LOC_Os02g12320NANA2+6406853..6415392retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g12330OsAffx.12000.1.S1_at11/112+6418378..6419378hypothetical protein
LOC_Os02g12330OsAffx.12000.1.S1_x_at10/112+6418378..6419378hypothetical protein
LOC_Os02g12340OsAffx.12003.2.S1_at11/112+6422491..6424004hypothetical protein
LOC_Os02g12340OsAffx.12003.2.S1_s_at11/112+6422491..6424004hypothetical protein
LOC_Os02g12340OsAffx.12003.1.S1_at9/112+6422491..6424004hypothetical protein
LOC_Os02g12350Os.20204.2.S1_a_at11/112+6424581..6430587histone deacetylase, putative, expressed
LOC_Os02g12350Os.20204.1.S1_s_at10/112+6424581..6430587histone deacetylase, putative, expressed
LOC_Os02g12350Os.20204.1.S1_x_at3/112+6424581..6430587histone deacetylase, putative, expressed
LOC_Os02g12350Os.28463.1.S1_x_at1/112+6424581..6430587histone deacetylase, putative, expressed
LOC_Os02g12360Os.53409.1.A1_at11/112+6433220..6441415nuclear protein ZAP, putative, expressed
LOC_Os02g12370Os.53540.1.S1_at11/112+6443131..6445361expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12000.1.S1_at--313--3291Chr02:6419274..6419298 (25 bp)
CAAAGAGATGATGAGACCGGTGAAT
LOC_Os02g12330
OsAffx.12000.1.S1_at--271--1351Chr02:6419277..6419301 (25 bp)
AGAGATGATGAGACCGGTGAATTCG
LOC_Os02g12330
OsAffx.12000.1.S1_at--64--711Chr02:6419281..6419305 (25 bp)
ATGATGAGACCGGTGAATTCGATGA
LOC_Os02g12330
OsAffx.12000.1.S1_at--928--691Chr02:6419284..6419308 (25 bp)
ATGAGACCGGTGAATTCGATGAGAT
LOC_Os02g12330
OsAffx.12000.1.S1_at--960--5991Chr02:6419286..6419310 (25 bp)
GAGACCGGTGAATTCGATGAGATAA
LOC_Os02g12330
OsAffx.12000.1.S1_at--46--1791Chr02:6419289..6419313 (25 bp)
ACCGGTGAATTCGATGAGATAAGCT
LOC_Os02g12330
OsAffx.12000.1.S1_at--991--3151Chr02:6419296..6419320 (25 bp)
AATTCGATGAGATAAGCTGGGTTTC
LOC_Os02g12330
OsAffx.12000.1.S1_at--572--6291Chr02:6419301..6419325 (25 bp)
GATGAGATAAGCTGGGTTTCGCGTC
LOC_Os02g12330
OsAffx.12000.1.S1_at--505--691Chr02:6419302..6419326 (25 bp)
ATGAGATAAGCTGGGTTTCGCGTCA
LOC_Os02g12330
OsAffx.12000.1.S1_at--653--351Chr02:6419307..6419331 (25 bp)
ATAAGCTGGGTTTCGCGTCAGGTTG
LOC_Os02g12330
OsAffx.12000.1.S1_at--938--7671Chr02:6419314..6419338 (25 bp)
GGGTTTCGCGTCAGGTTGCAGGCAT
LOC_Os02g12330
Target Sequence 
CAAAGAGATGATGAGACCGGTGAATTCGATGAGATAAGCTGGGTTTCGCGTCAGGTTGCAGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis