Browse Element(s) Details


Os.39041.1.S1_s_at

Description gb:BI804043
DB_XREF= gi:16576747
DB_XREF=H125E06
CLONE=H125E06
TID=Os.39041.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.39041 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1231011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12250OsAffx.24209.1.S1_at10/112+6382076..6382927expressed protein
LOC_Os02g12260OsAffx.2583.1.S1_at10/112+6385765..6387143hypothetical protein
LOC_Os02g12270NANA2+6387518..6387859hypothetical protein
LOC_Os02g12280OsAffx.24211.1.S1_at11/112+6389914..6391121hypothetical protein
LOC_Os02g12290OsAffx.2584.1.S1_at11/112+6397342..6399236Nuclear ribonuclease Z, putative
LOC_Os02g12300Os.53956.1.S1_at11/112+6399412..6402186Pectate lyase precursor, putative, expressed
LOC_Os02g12300OsAffx.18481.1.S1_x_at1/112+6399412..6402186Pectate lyase precursor, putative, expressed
LOC_Os02g12310Os.39041.1.S1_s_at11/112+6404019..6405861No apical meristem protein, expressed
LOC_Os02g12310Os.10944.1.S1_at10/112+6404019..6405861No apical meristem protein, expressed
LOC_Os02g12320NANA2+6406853..6415392retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g12330OsAffx.12000.1.S1_at11/112+6418378..6419378hypothetical protein
LOC_Os02g12330OsAffx.12000.1.S1_x_at10/112+6418378..6419378hypothetical protein
LOC_Os02g12340OsAffx.12003.2.S1_at11/112+6422491..6424004hypothetical protein
LOC_Os02g12340OsAffx.12003.2.S1_s_at11/112+6422491..6424004hypothetical protein
LOC_Os02g12340OsAffx.12003.1.S1_at9/112+6422491..6424004hypothetical protein
LOC_Os02g12350Os.20204.2.S1_a_at11/112+6424581..6430587histone deacetylase, putative, expressed
LOC_Os02g12350Os.20204.1.S1_s_at10/112+6424581..6430587histone deacetylase, putative, expressed
LOC_Os02g12350Os.20204.1.S1_x_at3/112+6424581..6430587histone deacetylase, putative, expressed
LOC_Os02g12350Os.28463.1.S1_x_at1/112+6424581..6430587histone deacetylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009611biological_processresponse to wounding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39041.1.S1_s_at--1095--7751Chr02:6405409..6405433 (25 bp)
GGTGATGGGTATAATTACTTGATCC
LOC_Os02g12310
Os.39041.1.S1_s_at--547--7691Chr02:6405415..6405439 (25 bp)
GGGTATAATTACTTGATCCTTGATC
LOC_Os02g12310
Os.39041.1.S1_s_at--1054--3131Chr02:6405421..6405445 (25 bp)
AATTACTTGATCCTTGATCACCTTG
LOC_Os02g12310
Os.39041.1.S1_s_at--925--8851Chr02:6405510..6405534 (25 bp)
TGATGATCCGGGTGACCTTGATGAG
LOC_Os02g12310
Os.39041.1.S1_s_at--844--711Chr02:6405512..6405536 (25 bp)
ATGATCCGGGTGACCTTGATGAGGA
LOC_Os02g12310
Os.39041.1.S1_s_at--750--2271Chr02:6405558..6405582 (25 bp)
AAACCATGGTGGCTAGAATTAACCA
LOC_Os02g12310
Os.39041.1.S1_s_at--567--5211Chr02:6405573..6405597 (25 bp)
GAATTAACCAGTAGCATCATGAGTG
LOC_Os02g12310
Os.39041.1.S1_s_at--525--131Chr02:6405575..6405599 (25 bp)
ATTAACCAGTAGCATCATGAGTGAA
LOC_Os02g12310
Os.39041.1.S1_s_at--221--10311Chr02:6405699..6405723 (25 bp)
TTTCGTTGAACTTTGTGTGCTTGTT
LOC_Os02g12310
Os.39041.1.S1_s_at--155--10751Chr02:6405704..6405728 (25 bp)
TTGAACTTTGTGTGCTTGTTAGCTA
LOC_Os02g12310
Os.39041.1.S1_s_at--1001--11Chr02:6405793..6405817 (25 bp)
ATTGTAAGGTTCGAACTCTATTGAG
LOC_Os02g12310
Target Sequence 
GGTGATGGGTATAATTACTTGATCCTTGATCACCTTGAGCCTCCANCAATGGAGTATCCTAATGTTGACATTGGTAATGT
TGATGATGCTGCTGCTGCTGATGATGATCCGGGTGACCTTGATGAGGAGATTGATGATAGCATNCAAGAAACCATGGTGG
CTAGAATTAACCAGTAGCATCATGAGTGAATGGTTTAATTTGCTGGAGATTTGAGTTAAATATCAGATAATAAAATAATA
ATACCAAGAATAAAAAGAAAACNAACCTGTATAGTTANCAGGTTTTGATTCCTTTCGTTGAACTTTGTGTGCTTGTTAGC
TANCCTATATACCNAACATNCCTTGGCGAGNCTTTCTATTTGTATATAGTTTTTTTTTCTTTTTCCTATTGTAAGGTTCG
AACTCTATTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39041.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis